MmuINT1026118 @ mm10
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107789090-107790203:-
Coord C1 exon
chr7:107790079-107790203
Coord A exon
chr7:107789231-107790078
Coord C2 exon
chr7:107789090-107789230
Length
848 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
AGACTCTTCTCACACTGCAGGGA
3' ss Score
6.22
Exon sequences
Seq C1 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
Seq A exon
GTAAGTGGTTCTTCACGCTGTCATACGGAAAGCAGGGCTAAGTAGACTTAACAATGTCTGGTCACAATATGTCTGACATGGAGGCAATCGTAAATGCAGCAGTCTCCTCATCCAATTTTGAGAGTCTGCTCTAAAGTGGGGAGAATAGAGACTGAGCCTGCTGAGGGCACTTCAGCAGCTGCATCTGATACTTTTAAATCCAGGCTGCCTGGGTCATGACCCCATTACGAGTAAACTTTACACATATTGCTGGGTCCCCGAGTCACCCCAAGTAAGACACCACTTAACTATGGTTGCAAGTGGATTTTACCTGCCTCAAAACACTAAGAAGAACGACACCAAGTTATGCCCATGAGAAGACAAAGCTTATTTGTATAATAAAAATGAAGCCAGGCATAGTAGCACATAGCTGTAGACCTAGAATTTGGAAGACTGAGGCAGGAGGATTGCATGACCATGGCCATCTTAGTATATACAATGATATCTTGTCTCAAAGAAACAACAAATTACAAAAATAGAATAGGGTTTCTATGGTTCTCACCCTGAAGTAACTTTGTCCATCCCATTGGCAATATTTTAGAAGTATTTTTGGCTGTTACAACTGAAGAGAATATAGGAGATTATATAGAATATAGAAGAAACCATATTAAAAGTATGTACACTTTTTAAATCCTGCAAAAGTCAAAGAGCAACATAAACAGAACATTCTGGATCAAAATCCTACTAGTGCAAAAGCTGAGCAGCCTAATTCAGACAATCCTGAACTTCCAGGACAAGATGTATCTCCCTAGGGCATGTGACTAGTGCCATTTTCCAGACTCTGAACAAAGACTCTTCTCACACTGCAG
Seq C2 exon
GGAAATTCTGTGGAGAAAATCTCCCTTCATCCATTCTCATTGGCTCCAGTTCCATCCGGCTGAGGTTCATCTCTGATGCCACAGATTATGCCACTGGGTTTAATCTCACCTATAAAGCACTTAAGCCGAGATACCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236:ENSMUST00000106755:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
NA
C2:
PF0043115=CUB=PD(34.3=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGTCTGGACCTTCCT
R:
GGATGGTATCTCGGCTTAAGTGC
Band lengths:
264-1112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types