MmuINT0115078 @ mm10
Intron Retention
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83784264-83786682:+
Coord C1 exon
chr12:83784264-83784401
Coord A exon
chr12:83784402-83786554
Coord C2 exon
chr12:83786555-83786682
Length
2153 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCAT
5' ss Score
0.82
3' ss Seq
TGACAGTGTTTCATCCCCAGGCA
3' ss Score
8.32
Exon sequences
Seq C1 exon
GTTACGTCTGGACCGGACTCAGCCTGGAGTGGTAGATGCCAGTCCTGGCCAGCGGATCCGGCTGACCTGCCGTGCTGAAGGCTTCCCGGTCCCTACCATCGAGTGGCAAAGAGATGGGCAGCTGGTCTCTTCTCCCAG
Seq A exon
GTCCATTCATCCCGTCCCTCCTGCTGCCCTGGCCTGTCTCTAGCCACACCTCATCCTATGGAGGCCAGAGCAGGACTCTAGGCCCTGGAGGAACAGAGTTGGAACGCAACAATTCTGGGCATTTCCAAAGTATGGTTGATGACAATAGGAGGTCGGCCAAGGGAGGAGGCAGCTCTGCACGGCCTGGGTGGTTCCCATTGCTGCTGTTGACAGTCTGTCTTGGGAGATGCAGGGAGCTATTCAGGAGTATGTGCAGCTTGCCAGCAGGTTACACACAGGCGCTAACTAGCACGCAGTTCACTACAGAATCGGGATTTGAGGCTGTTTGCACATGGCAAAAACAATAAGTCTAAGCCCTTAATCCCAGCACCCTGGAGGCAGAGGTAGTTCCTGTGAGTTAAGGCCAGCCTGGTCTATGTATGGAGTCCCAGAATAGTCTGAACTATATAGTGCGAGCCATTGAAAGGGAAAGTATCCACTCGGGACCCCTAAAACCAAGTTCTTAGCACAAAGGAGATTTATTTATCTCCGAGAAGACAAAGGGCAGGGAATAAGAGACAAAGACAGGAGCTAGAGGAGGAGGGAGACAGGGAAGGAGCGGGACGTTTGTCCTACAGAGGGACAAAGGACTGTCTCTGGATAGAGAAGATAGTGTCTCTGGTTAGAGTGGCCCATAGGAAGATGTGGTTTATAAAGGTACAAGAGGGGACTGGAGAGGTGGCTCAGAGGATCAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGCTCATAACCACCTGGTGCCCTCTTCTGCATGTATGTACAGGCATACATTCAGGCAGAACATTGCATACATAACAAATAAATCTTTAAAAAATAAGTACAAGAAGAACACCCCTGCCAGGATGAGGTATTTAATTGGGCATGTTAATTAGGTGAGCCAAAGGGGGCTTTTGATTGCTGGACTTCAATACTTTGAGAGTTGGACCTTAGCAGTCAGCCTCAGGAGCGGGAAGTGGCCAAGTTAGGGACCAGACCTTGGTGGCTTGTGATGCTGAGCGTGTACTTTTGTTTCATGCCAGCTGCAGGGCTGCACCGAGCTGTCAGCAGCAGCTGACGGTGCTTTGCCTTGTGCTCTGGCACAAGTGTGGTCCTGCCAGATTATTTCTGCAATTGTATGATGTTTGGAATTCTGGGAACTTTTCAGAGGATACATAAATGCTAGCTCCTCCACCCCCAGAGGGTAGGTTGTTGTCAGTCATTCAGGGGGGTAGGTTGCAGTTTGTTAGTAGCAAAGAAGCAACAAAAGGAAAGAAATTAGACTTAGGGATCTCTCTCCTTCCACCCTATCCTTCTTTCTCTCCTATGTAGTGAAAGAGGTTGAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAAAGGGTGGGGAAAAGAACCCACTAAGTAACAAACAAAAGTCAACTACAGTTGCTTGCTTTAGGAATGTAATCTCATGGTTTTTCGCAAGGCAGAGGGAAAGGGAGGAGAAGGGCAAGGCTGGCAACCCCAGTGCTGGAATTATAAGCACTCCCCCGCCATGCCTGCTTGCCTGCCTCTCATCCTCCCCCTTCCTCTCTTTTAAATATGGATTCTGAGGGTTGAACTTAGTCCTTATGCTTGCAAGACAAGCACTTTACTGCAGTGGCTGACTTGCAACTTGCTCTGTAGAGCAAACTCAAACTCAAGAGATTCGTCCTGCCTTTGCCTCTTGAGTGCTGGGATTAAAGGCCCACGCTATAACTCATCTCCCCACCCACCTTTTTTTGTTTTTTGACATAGAGATCACACTGTAGCTCAGGCTGGCATGGGAGTCACAATCCTCCTGCTTTGCCAGTCCCTGAGTTCTGGGATTATAGGCCAACACACCTGGCCCCAAATAGCTTTTAAATCAGAAAATGTGAAATGATGTGTTACTGAGTTTAGAAGCCAGGTATCATCAAGTGACTTACTGAAGTGCAGGCACTGCACTGTGTGGGCCCTCAGCGGCTCTCTGGGTAGGCATTTTTGAACAGTAGGGTCCTGCCCAGCTCCCCTCCCTACAATGCCTCTCCTGATCCACTTGGGTCAAAGACAAATGACAGTGTTTCATCCCCAG
Seq C2 exon
GCACCAGGTGCAGCCTGATGGCTCTCTGGTCATCAGCCGAGTGGATGTGGAAGATGGGGGCTACTACAGCTGTGTTGCTTTTAATGGGCAGGACCGAGACCAGCGCTGGGTCCAGCTCAGAGTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223:ENSMUST00000121733:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(49.4=87.2)
A:
NA
C2:
PF0767911=I-set=PD(49.4=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types