MmuINT0115691 @ mm10
Intron Retention
Gene
ENSMUSG00000027168 | Pax6
Description
paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105668900-105679889:+
Coord C1 exon
chr2:105668900-105669049
Coord A exon
chr2:105669050-105679809
Coord C2 exon
chr2:105679810-105679889
Length
10760 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTTTCTCTGTTTTGTCTTAGGCA
3' ss Score
10.78
Exon sequences
Seq C1 exon
TCTTTTCTTATCGTTGACATTTAAACTCTGGGGCAGGTCCTCGCGTAGAACCCGGTTGTCAGATCTGCTACTTCCCCCCGAGAAGCGGCTTTGAGAAGTGTGGGAACCAGCGCCACCAGACTCACCTGACACCCCACCCTCGGCTCACAG
Seq A exon
GTAACCGCTTTGATTCTAGCCAGACTCACCCCAAGAGTAGCGGCGCCCCTCTCCGACGTGCAACCTGTGTGTTCAGGTCATAGAAACCCTCCCCGAGTGGCCCCGGCCTTGATTTTTTTCTTTTTCTTTTTAAAGGAAGCTTACAAAGATGGTAGAGGAGTTGCTGCGGATGGGACGGGGGTGAGGGGGAGGGGATGTCTTTGCGAAGCATGCTTCTTTGTAAAAGTAACAAAATGTTGTGGTCTCAAGAGAGGACTTCCCGTCTGGCCCTGAGCTGGGGGTGATGTGGGGGGTGGGAGGGTGGTGGCTGTGGCCGCAGTCTAAAGAAATCGCTGAGATCCTAAGAAAAGCAGGCGGTGGGCATGCAGTTTGCAACACGCCTTCCCCCGATGCAATTAGCGACATTCATGCTTGGAGAAGCCACCAAGCCTCGCGCCGAATTCATGGAGCACCCCGCGGAAGGTCGGGCGACTTGCGACAAAAGTTTCCCCAAGGTTGTGTAGATGTGTGTTCCATATCGAAGTCAAAGTCTTGGGGTTCGTTTCCCCCGAAAGGAGCACAGGACGAAAGAATGCGGCCCTCCAGAGCTGGGCAGCGCGCGCGAAGGCCCCAGCGTGTGATTTGAGCTTCCTTCGGAAGACCTAATAATTAGCGATTCTCACTGAGCTAGAATGCGGGCTCGGGTTACCGGGAACGGGTTCCTAGCAGCGGCGGAGCTCTTTGCCTCGGCGGGAAGCATGTGGGCTCCAGGGGAACCCGGTTGCTGAGTGCCCTGGAGAGAGATACCCAGCCATGCTCCGGCTCCAGGAAGGCCAGAACTTGGCCGAAGTGGGTCAGGAAAGTGATTACCCCTAACTTAAACTAAAAGGTGTTTTCGCCAGGTTGGAAAATCTCTCACTCAAGCCCTAAGCTTACCAGGAGCCGCTCAGGCTGCCTGAGTCGGGGCACCGGAGCAACCCACCGGAAATTTGAGGCCATGTAGCAGGCCTGGCCTGGATCTCGCCCACTCCCACGCGTGCTCCTGACGCCCTCTCTCTAGACCCGCTGGAGGCACTTGTCCAGATCGTTTGGCTCTCAAGCACCTGTGACAGGTGCCCAGGAGTCTAACTCTGAGCAGAGTCCCCTCTGAGCGCCTCACATAGAAAGGAGGCCACGGGCAAAGTGGCCACCAGTCTGAGCACCTTACCTGAACGGGGGTCCTCTCCTCCGAGAGTTCCTTATTCCAGAGTTGAGCCGTGAGCAGTTTGCCCGCTTCGCAGTAGGAAGTGGACCTTCTCCTCTAGTCATAAATCAAACCAGCCATCCTCGGGCCTCCTCCCTCATTAGAGATGTTTATTGGAGATTGTGTTTATTCGGCTGTCACGGCGAGAAAACGCGGTGACATAATTACCTCTGACCAGAGTCCTCGCCCTGCGCCCAGGGTGAGCCAGGGACTTCCTCTGCTGTGGTCTTACTCTGCTGCCCTCCTTGATCAGAGGGCAAATCGGATTGGTGTGTCTACTTTTTCCTCCCTCAGACTTCGTATCATTTGAATTATTGGAGAACTTAGTATTCAAATTTCCGCCAGTGCCCAGACTTGGAAAAGAAAACCAAAGAGAATCCAGCTTCCAGGGAGAGAGGGAGAGAGAAGTAAGGGAGAGAGAGAGGGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAATCTTGCATGAGAACTTTCTAGTGCACTGGCAGAGATGCTTGGCCAGACCTAGAAGGACGAGTGCCTGTATTTGTGGTATTATTTTTTCTTTTGCTTCCCTTTTTCATTCCTTTTCTTTTCGGGAGGAATCTGGCTGCAGAGCCTTGATCCCAGAGTTCGGATATTCTCCCAGGTGGACCCCGATCTCCGAGGAAACAACCAGGGCTTAATCCCTCATTGCTCTGTCCCTGACTCCCAATCCCCACAAGTTTTTCCCTGATGGGGAGGCTTCAAGTCACCATCTGTGAGACTGGGTTAGGAAATGATGAAAAGCGCCAAATTGTTCTCTAATTGAAAAATACATTGTTTTTTTGGAGGAGTGTGCACTGACAAAGTATCTGGGATTTCAGCTTTTGATCCCTTGCTACTGCTGCCTCTGCTCTCCAGTCACTAATAAAACTCGCATTGAGCCCCTTAGTGCCTTGATTAACAGGCAGATTAACTCTTACTGGGGTTGGGAACAGCTTGTCTCAATCAATGTCATTTTAAAAGCCTGTCAGGATGTGCTTAGTTCGGTTCCAGGCTGCTGGAGTGAGCCAGCCCTGACATTTGCTCTCTCTTTCCCAGTCTCAAAATCCTGAGCATCAGGCCTGCACGTTTCTAGCTCCTGAACAAAACAAATGGCAGGAGTCAGTCCCTGGCCCTTCTACCAGGCAGCTGTTCAGACATATTCTATAGAGCGGTGACCTTAGCAAGCTTTTCATTTGAAGCTGAACACTTACCTCTTTAGTACTGAGGTTAGAAGAAAAGGAGACTTGAAGGAATGTCCCGGGGTTGGAGAATGGAAAGAGAACTTTTCTAGACACCCTATCTGTAAAAATCCCAAAACGATGGGATTTCAGGGTGTCCTATGCGTTAGAGACTTTGAATCTACTTTCCATATAGACAACTGTAGGATGTGGAAGAAAGGAAGCTTGAGAGTTAACTAGCCTCCTACAAGAAAGCTCTTTGCTGGGACACCCATCCGGACAATGCCGGGATTTAAGCATTTTAGGGGTGGGCTGGGAGGGAAATGGAGGGGGAGAGGTGCTGACCAATATGAAGAGAAGAGGATTGGACCCGCGAGCGCCCAGATACACTAACCATTTGGCAAGAAGAAAGGAAAGGAAAGGGCACCATGGCTTTTTCCAGTCAAGCTAAAGCCTGGAGGCGCCGCTGGGCGGTCGTTCGGCTCTCTTCTGTTTCTGTACTGTCCTGGGCTTTGGCTAGGCTAGCCGGTGAGCAGGATTCAGGCAGGTTGCTGGGGTAAGCGGAGAGAGAAAGCCCCAAGCCAGGGAGGCATCAGGAACTGGGTGGCTAGGGTGGAAGACTTTGATTTTTATGACCTTTTGATTTGTTTGCCATCCCAGAGATCCCTGGAATCCACTCTTCAGGGCCTGCAGAAAGAGACACACTTGGAGCTCTCTAAAGTGTCTCGGGTGTTTACTGAGACCTTCCTCCTCCAAAGAAATTCATCCTTGCCCTCCTCAGTGTGTCTGCAACCGCGCCTCAGCTAGGACCAGTCAAAATGGGAGTTTGGAGGTGTGGGAACACGGAATGGAGTACTGGTTGTTCTGAGGCTGTGAGGCCAAAGCACATTTCCCCAGAGAACTGGGCACTTCTTTGCCTCGCCAGGGGCCGCTCTCGGGACAGAGACTAAATGCGGTGGGTACAGGCTACCAGGGACTGTTGGGAGTGATTCTGAAGGGGCCTCCTACTTTCGCATCCATGATGGTTAGAGAGGTTCTGAACACCGTCGGGCAAACCTCGATGCCCCCAGCGCCACTCTACACCACGAGCTTTCAGTTACCCGGCCAGAGGAAAACCCGTCCTCGCACGGGTCAGAGGGTAGAACGGAGGAAAGAGTAGCAGAGTAGTAGTGAAAGGCAGCGGGGGTCGGGGGGGGGGCGCCTAAAATGCAGCTTCGCCAGCCTTTCTATTCTAACACTAACACTGGAGGACAAGCGAAATGGGCCTCCGACGGGTTGAAAGCCTCAGTTAAAATGGCGACCCGAGCGTTGTCTCCGTTTTACTAGTGCCTTGCACCTTGGTTTTAGCCTCCCTCCTTCCAGGTCTCTTCCCGACAGCAGGTGCTTGGCAGAAAAGATGATTCACCAAGGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGGAAGGGAGGGAGGGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCTGGCTCTCATCCCTTTCCTTAAACTTTAGAAACTTTGCCTCTTTCTGTTCCTCAGCTCCCCTCCCCAAATATTGACACACTAGAGCAGCCAAGTCCTTTCTGTTTCTTGTTTGTGCAGTTTCCAACAGTCCCACCCGAAGCCCCCATCCCCACCCAATGACGTCAGCGGCATTCATGCCAGGCTCCTAGCTTCTTCTGATTTTTTTGTTAAAACTTTTCTCTGAGGTGAGATGGGGGTTGTGGGTGGGAGAAGGGGCTGATTGAAAGAGCCAGTGCCCTGGGGGGAAATAGCAACAAGATTATGGCTGCCTCTTTCTTAGGCAAAGCTTAAGAGGGTGCTAATCCACTGGGTTGCTAATTGAGAGGTTGTAAAAATGATATTCGCCGCCTCCAATTGGGACAGTCGCTGGGCACCCCCCCCCCTCATCTTGCTTCTTTAATGCTTGCTTGAGATGTAAAAGGGGAGAAAAGGAGAATGCTGACTTCTCTGATCTGGAACTTGGACTTCAGGCAGGACTTCCTGGGAACCTCTGAAAGTCCCGGTCCTACGAAATCTTTCACTGGAGGCCGCCAACTGCAGCAGTGGCACCACCTTCTTAGCCTCTGGCCAGTGTTTCCTTCTAGCTCCGATCCAGTGCCTTAGGTCCTCCAGAGTGAGCCCAGCTAGTCAGCCACCTTTCCCAAGCTGAGGAGATGAGCAGTTTGTGCTAACCCACCTCTGGCTCGGGTTACGGAAGGCCTCTTCTGTCCCCGGAACTCTGCTAAGGCTCCTTGGGTCCTTATTGCTGGGCCCCAGGCAAGGGCTAGACTAGGATGTCCAAATCAGGCTCAGAGGCAGCCTGCAGCGTCCATCTGGCTCCAACTCCCATGGGGATTCATCAGCGCAGCCTGCCAGAGATCAACTGAGTGAGCAGACTACTGCTGGACGCTGACTTTCGGTTCTTTCCCTAAGTCAAAAAAAAAAAAAAAAAAAATCAAAGGCTTCGATGGTGGCTTTCGGCCTCCTTGCCTGATCTTTGCCAACCCCACTTCCCTTTGCTGGGTTCTGAGTGTGTTCCGGATCTCAGGCCTTCTACTTCTCGGCTCCAAGGCCCGCAGGCTGCGAGATAGCTCCGGACAGCTCAGGACAAGGCGGCTGCCTGCTCCCCTGTCACCTAAACTGCAGACTCCAAGGGACGTCTTTGGAGTGTACTGAGGTGTATCCTAATGTCCGGCATTCAACAAATGGACTTCTGGTGTGTGGTCAGGAGGGAAAAGCCATTTACTTACTGTCCTCGCCGTTTTTCTGGCAACAGTTGAAGGGGAATTGCCTCCGTGGACTGAGCTGACCCAAGAGAAGGGAGTCTTGGCGGGGATACATAAGCACCACACACAGATAACCGGTTCCTCACAACGACACACGTTGACACACCAAGAAAGCCGGCGAGGACACACACTTGCAGAATCTCTCCCAGCATTGGTCAAACCCCACCCCCACCCTCAGGCTTCCACTACTTCCCCTCCCCTCTTGTCTTCCCCTCCTTTCGATGGCTTGGAAAAGCAGCCGCACTTAGTCAACAAATGGCACGTGGGAGAAGTTGGAGAGTGTTTGGTGAGGACTCTTCAGAGCTTTTCACAAGAATCCTCTGTACACAAAGTAAGTGGCGTGTTTACTCGAGCCTCTCCAGGCTGGGGCAGTGCGTCCGCTCCGCTGAGCACGGCGGCTTCGGAAAGCAGAAAGAGAAGAAAATGCCAGCGGTGCGGGAGTGGGGTGGGGGGAAAATGGGCAGGCTCGGGAGGCCTGAGCTGGGGTGACCGCCGGGCCTCGCTGAGTTCTCGGCCTGGAGGCCCTCTTCGGGCCTAGGCATAGTTGTGCCACCATCGCCGGAGTGGGGGCTGCTGGGATCCAGGGACACTCCCGCCTCTTTTCTCTTGTTCCTAAAAGTCAGGTGGGCTAGAGAGCCGCCACCGCTGTACTTTGTGTCCTGGGGCCAAGGCCGAGGTGGACAAGGGGTGGGAAGTTAGGGTGAAATGGGGCGGAGCGGCAGGCCACTGTACAAGAAAGGACCTCGTAGAGATGGTGAAACTTGCTACCTCCACGGACTGAGAACCCCTGGCCCAGCTTGGGGTTACGGGGGCAGCATGCTTCCAGCTCAGAGGCCTCCATTAGACTGATCAAGTTCGCGGCCGCAGCGCTGGCCGCCGAAGCGCATGGAGCGGGAGACCTCGGCGAGCGCCAGAGCCTAGGAGCGGGGGGCCCAGCGCCGGAGAGAGAAGCCGGGACCCACCGGCAGAGCCGAAAACAAGTGTATTCATATTCAAACAAACCGACCAATTGCACCAGGCAGGGAGAGGGAGCATCCAATCGGCTGGCGCGAGGCCCCGGCGCTGCTTTGCATAAAGCAATATTTTGTGTGGGAGCGAGCGGTGCATTTGCATGTTGCGGAGTGATTAGTGGGTTTGAAAAGCGAACCGTGGCTCGGCCTCATTTCCCGCTCTGGTTCAGGCGCAGGAGGAAGTGTTTTGCTGGAGGATGATGACAGAGGTCAGGCTTCGCTAATGGGCCAGTGAGGAGCGGTGGAGGCGAGGCCGGGCGCCGGCACACACACATTAACACACTTGAGCCATCACCAATCAGCATAGGTGTGCTGGCTGCAGCCACTTCCCCACACTCTTTATCTCTCACTCTCCAGCCGCTGACAGCCCATTTTATTGTCAATCTCTGTCTTCTTCCCAGGGATCTGAGAATTGCTCTCACACACCAACCCAGCAGCGTCCGTGGAGAAAACTCTCACGAGCAACTCCTTTAAAATACCGTCATTTCAAACCGTTGTGGTCTTTAAGCAACAACAGGGGGGGGGGACCCAAACAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTCAAAACTCTTGACAGGAGCCTTGACAACGACGAAAGAGAGGATGCCTCTTAAAGGTGAGTCCCGCTTCTTTCTTCTCAATTTCTTTATATTTCAATATCCTGGCAGGTCTCTCCCTCTCTTCTTTCCTCCCCTCTCGCCGGTCCCCTCCCCCACTGCTACGCCGGGAGAGTTGGGCCTGAGAAGTTTCCACGCAGGAGCCCAAACTTTCTACTTCCAGCGAAAGCCCGCGTCGGAGGGCGACGGTCCGCGCGAGCCACAACAGCGCGGATCTTCAGGCAGGCGGCTGGCTCTGCACCAGCGCAAGTGCGGCTGGAGCTCTCGGAGAGCAGCTAGGCTGCAGGGCGCCCCCGCAAACCGCAGCTCTCAGCTTCAGCGCCTCCAAAAGCTCGCGGTCAGCGCAAAGGGACGTAGAGGCTCCTCCGTGCCCCAGGCCGCGGAGAGCAGCCGCCGGCGATGCTTTTGTCCAGCCCGGGCCGAGCCAGCGCGCAAAGAGCGCCCAACCAGCCGACTCTCCGCGCCGCCTCCCGCCAGCCCGCGCTCCGGCTTTGTGCAAGATTCTCCCGGCACAGAACTGCCCGCAGCACTCGAGCACCAAAGGGTCATCGCGCCCTCCGCCAGCCGGAGCCGTCTGGATGGGCACCACGGCCGTGCGCCGGAGGCCACGAGGGACCCAGAGCGAGAGCGGGCGGTGAAAGAAGCCACTAGGCCGAGGCGGTCGGATGCGCTCTGCGAGGGAGCTCCGAGCCGATCGCAAGGACTGCCAGCTTCCATCCACCCCCCAGGGCCCTCGCCTCCAGCCTCAGCCGAGCGCTGAGCTCAGATTTGGAAACAAACGCCCTAGCTCTCCCGGCTTCCCACAACTCTATCTTGCGAAAGTTGGTGTGTTCCCTGTCCTGTGGACTCCCACCTCCAGCTCTTGGTGGGTATTTTCCCGTGTCTCCATTGACCAAGCTGTACCCCGTGTTGCCATTTCAACAAGTTTCGAGCTGGAAAGGCGGTTTGCTCCCCCTTTTCGAGTGTACTGATATTTTTCTTTGTGTGGCCTAAAGGGGGAAAAAAAAAACTACAAGAAAGCACTGGCTTTCCCTCTCCTCGGATCGCGTCCTCTCCCTGCTAATTAGTCTGAGTAATTCGAGAGCTTTTGGATTCTAAGACCCCAGGAGGAAAAGTGGCTTTTCAAAGTTCAGAAAGTTGTTGCCTCTTTCCCGGGGCAGATCTCCTCAGTCTCCCTGAGCCATAATAGCCTCGAATTTTAGCAAGTGTAATTGAGGGAAATGGAGTTGAATTTCAAGTGGAAATGCTTTCTTTTTCGAGTGCTAAAAAACCTGGCCTTTCATTAATGAGCTTTCTGAAAAGTTTAAAAACAAAGTGAATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATTTTGGATGTTAAACTCGAACTTGGGAAGGGCTGAGGAGATAGGATCAGAAAAACAACTGACAAGCTAAAATCCTTGAAAGCCTAGCAGGTTTACCCAAGAGCACGAATAGTTAGTTGTTGCCGCTGACGGGGAGGAGGTTGCCGCTAACCGGGAGCAGGGCTGCTGGGGATCTTTGCATATGTTTGAAGGCAATTGATGAGTTGTAATCATTTGGCCCTGGAGGGTAAACTTTGTCGCCCTAATTGCTAATTTCCAGGAAGGGCATCTGGAAGAGAGAACCCAAGCTTCTCTGAACACTTCAGCTCTGGAATGCGGGAGTAGGTTTTGAAATTTAAATAATTGAAACAATAGCATAGTGTGAGAGTTCTGGCTTGGGTTTGGGTCAGGGAGTGAGGAGGACAGAGGTCCAATGGACCTTGGAGACTCAGACCTTGTGGCCTTGGAGATTTCTGAATACTCCTTCATTCCTGATGCAGGACTATGACCCCCTCCAAGGCAATACAAAGACCTAGCCTAGGCTAGGGGTTTGGGCTGAGGCAGAGGGGTCTAGCTTCTTTAAGAATAGGTCTGCTTCCGGGTGCAGGGTGTGCCCTGCTTCCCAGGGTGCTTTCTGCACTGAGTGTTAACGACTACTTAGGTAATTAGATAGCTTCTTAGAGGAGAGGAGGGTGGGAACCGAGCAAAACCGGAACCTGAAGTGCTATCACCTTCCCACTTGCTTGGGAAACTAATCAGCTAGCTTTTGGGGGATCAGCTAGACAATTTTCTAAAATGGTATTACGGAGGTCCGAGCCGGCTTGGAGACATGAGGCTGTGTAAAAAATGTGGTTCGAGAAGAGCTTAGGAAGTTTTCTGTCGCAAACAGAATTCTCCACACACACACACACACACACCCTCCACACACACACACACACACACACACACACACACACACACACCCTCCATACACACACCCTCCACATACACCTGCTATCCTTTGCAGCTTGAGTCATATATATATATATATATATATATATATATATATATATATATGATGGACATTTTGTTCTAGGTGAGGTATCTGTTCGCGACATGATATAGATTCAGGAACTGGCCTAGAGACAGGAAGGAGACTGTAGGAGTTAACCGCAATGATGGTATCTAGTCCTTGGCTATGTTCAGTCATTAAACAGACACTGAGAAAGTCCTCATCCTAGACTTAGGTCTTATGGATTTAAGTTGCCTCTCAGTTACTTAAAAGTTAAATCATAAAAGGCCTTAAAGAGAAAACTATTCCCTGGAATTCTTTGCAGGGTGGCAAAATTAATCATCATCACAGCTAAAACAAAACAAAACGGGGGGGGGGAATGATTTCTTAAAAATAAAACTAAATGAGATGCTGTGACTATTTCATTATTTTAACCCTCCCCCTTTTTCCTGGGCAATCCTCTTGAATGGGCTCTTTATTGTAACTCCCCCTTTCCAATTGAGCTCCCCACGGTGCCCTTGTATCTTTTTACAGCCCCTAACAACTCACACCAGTAACACAATTACCTCCAGATATTTATAACAAGAAATTACTTTACTATTTTCTCCACCTCACTCCCAAGAACCCTCTTTTTGAGGGAAAGCCCGGAGGACTGGACGCCTTGAGGGGCGCTGTGGCAAGTCAGTACTTCAGTGAGTGGAGTCCTCATTTTTTCCTTTGGGAGTTGCAGAGTTGTTGGTTTCTTTGCTTGGACCTGATGTAGCTGGGTTGAGAGCCTGGGCTTTACTGTCTGGGTTTGGGGAGAGCCACAGAATAAAAGCCATTGTTTGGTGTCTGTAGACTTTGTCTACACCCCCTTCCCGTTTGTACTTTTTAAAACAGCGAGGCGAGGTGGACAGCTTGTGTCACGGTACAGGAAAAGAGGAAGATGTAAACACCAAAAGCAAAGTTAGCTACAATAAATGAGATCTAGGGTAAAAGGCTCACCACTTGCTCAGTCAGGAAGGAGCTGAGAGATGGACTGTGGGGGTCTGACTGGAAAGCGTTTTTGGGGGGTGGGGGGGTGGTTAAGTATAAAGGAGTGCCCAGAGAGCTTAGCTCCTCAGGAAAGTTGGGAGCTTGGTCTGAGGTTCACCCAGACTTCCTAACCTGAGGCCCAAGGCACCACCAGGTCCTTCCCTTCTTCCTCTGCACACTCCCTTCCCCAGCGCTGTCTCTCCTCCCCTCTCTAATGTTTTAGTTTAAACCTTCTCCTTTCCCTGGTACTTGGTAGTTTTGCAAAGTGAGACCCACAACTCAATTTTCCCCATTTTCCCAAGCCTAGCCAATACAGCCTTTTCCTGAGCATTTAAATTTCAGTGGGAGAGGCCACTGGAAGCTTGGGGTGGGTTTGGTGTTTCTAGGCAGAAGGATCTAGCCTCAGATTTACTTTAAGTGGACTGCAGACAGACAGCCAACTATGTGCTGGGCCAGTTTGACACACCTTTCTCTGTTTTGTCTTAG
Seq C2 exon
GCAGAAGACTTTAACCAAGGGCGGTGAGCAGATGTGTGAGATCTTCTATTCTAGAAGTGGACGTATATCCCAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168:ENSMUST00000111086:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types