MmuINT0115808 @ mm10
Intron Retention
Gene
ENSMUSG00000052534 | Pbx1
Description
pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
Coordinates
chr1:168183530-168191437:-
Coord C1 exon
chr1:168191278-168191437
Coord A exon
chr1:168183620-168191277
Coord C2 exon
chr1:168183530-168183619
Length
7658 bp
Sequences
Splice sites
5' ss Seq
CGGGTTAGT
5' ss Score
4.94
3' ss Seq
GTTGTTGTTCCTCTGTCTAGGTG
3' ss Score
9.68
Exon sequences
Seq C1 exon
GTATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCTACTCCCAACTCAGCGG
Seq A exon
GTTAGTTTCCTCTTTGATTTGGGGGGATTATTCTCCATTTGTGTATTCGTTTTCCCTACTTTGAGATTTTGTTTTGATGCGTATGCGTTTTGACTCATCGATTTATACTGCAATTATCATTTGTTGTCAGTGACAATTCAGGTTTTTTATCTTTTTATATCCAAAGGACAGTGTGCTTTTTAAGGTGGGGCTGTCTGCAAGTTTGCATTGCAATGCATATGTTTAACTTAAAATGGAGGTATATTGTTTGGATTTAATGAGACCTCTAGAATCACTGATCAAATTTAACATGTAGGCAGTTCCTTTGGATTTTCCTATGATGTTTTCATCCTTGTTTATCTTGCTGTCCCCATTGTGTCTGGGTCATGTGCTGGCGTGCCTCCTGGGCAGGAATATTCTTCTAGCAAAGGTCTCATTGGCAAATTCCAATCTCCAGGGCCAGGCTACAGTATTTCCTAGAAGCTGATTAGAGATATTATTCCTTATCGTTTTCTTTAATTGGTTTTCCTTATGTAAACTATCAGGAAAAATTACAAGCTATTAAGCCAAACTTTTCCAATTCTAGTGTTCATACTGGAACCTCAATCATGTGCCCTGGGTCTAAGATTTTTTTCCGTGAACATGCATTGTACACTAAATTCAGACTTTAAGCTGGCATAGAAGTACATTTTTAGAAATGCCCTGTTCTGTTACTTCTGAACCTCCATGATTCCAATAAAAAGTCAGTAATATATGAAGTATAACCTCTATGACTGTTTGCTGCAGAAAACATGTGCATACTTCTGGAGGGGAGAAAGGGAAAACAAAAGTTTCCTTATTTAATATGTTTAGTATCGGAAGTCATCCTACTCTATAACAGACAAAACACATTTATTTGGAATGTGGAGTGTCCTTCTAAGTCCGGTGATACCAATAATATACTAGCAAATCCAAATATATTGATTTATAATGCGGTTGCATATATGATGGCTGAGGTTTCTATAGAGTATATATGATGACGTCGGCCTCACAGTCTGGTTGTTTACGATGGGGCTTCTTTGTGCCGTATGCTGCCTTTGTAACTGGATACCTTAGGGCACCACACACTTTTCTTCTGTGAGCTGCTCCATGCATTAATTTGTTATCATTGGGTTCTCCAAGTCCCTGGGCTATACTACCATGACCTTCTTTTGTTTAATTGGAATCAGGCATGAGGAGAGCCCTTGGCTTTGTAAACATTGGCATCATAAGACACTATTTAATTTGATCCAGTTTTATGTTACTCAGCTATTAAGGTCAGGCTGCCCTGAAGAGAATGCTTTTGAAGGTTTTGTTGTTGTTGTTGTTGGCCATTGTTGCTCTTCCTCATTGTGGTATGATTGATAAAAGGTCCAGGCTAACAGGACCAATAACCACAGTTTCCTCATTCCCTATCTGGTTGATTATTGAAGATTTCAAACCCAGCATCACAAGGTGAACTGCGGTGCGAGGCAGACATTCTCACTTATCTCCTTGGAAGAAGTATAATTCTGTCAATATTAGCAAAAATGCACTCAACAGTCCTGCAGAGGTTATCATAATGCAAAACAGATATCAAAATGACTTTTTCCCTGTCCCAGCTATATCTGCATCACAGATGGCTTAGATGATTTATGACTAGTCCTTAGAAGGGCCCTGTGGGCTCCCTTCATTACTAAATCCATAACTATTTTTCTTTCCTAAAGCCCTTAAAAAGAGAAAAGTAAGCATTTTAACCCCCACTCTGTGTTTAAGAATTATGTTGGCTCTTATGGAATGTCAGTCTGATTACAGTTTTCTAAGGAATTTTCTGGTAGCTTAAACTTCATATAACTATTCTGAGCACAAAGTACATTATTATGGAAAACTTGAGCTAAGCCTTCCAGTTGTGCCTAAGTTATTGGAAATAATTTGCTGAGGAACCCTTTGTAATGTTCCCTTTCTAATACGGAGAGCAAAGAAAACACTATTGTCGATGTGCAATAGCATGGAATTTTAAAAGATAAATGTCTTAACGGGAAAAAGTTATAAATGGGCTTTTCTGTATTTTCTTCAGCTTTTAACAGCCTAAATCACGAGGCAGATTTGAGGATAAGTGCTCAAACTTTTACATAGAGTGTTTATTACATTGTGTGCCATCTCCTCAGTAATTTCAAAGGAGAAATGGCAATGGAAGGAGATTGTAAATAAAAGGTTAATATATGAAAAGGTATTTGGGTAGATTTTGAAGTCCGGAATTCTGGCACCCATGACAGTTTTATATTTTCAATATGAAAATGGAAATTCTCCCAGAATCTTTGCTTACTTGACATGCTCATTTCCACTGCAGGAAAAGCAGCACTGCAAAGAAGCCCTCTCCCCTCCCCTGGCTTTTGTGCAGGGAATAGCACTTGAGTGATTAGCAACCCATACCTAAGCAGCTCGCTTTTTTTCAGTAGACTTCCCCCCCTTTCCATTCACAAGACCCCACTTCATAAAAATCACCTAGGACTAGGTGCTAGGGCTTTCTAAGTATAGAGAGATTTTCAGCATCATTTATTGTGTCTTCCAGCAGAGGCAGACAAAGCTGATGCAGTAATGAGGAAGGATAAAAAGAATGAAGTTGGGGGTGTGAGAAATGAGAGAACTGAACGACAAAATTGTAAAAACCATTGGCTATAGCTCACTGGGAGACTCCAAATAATGAGCTCTCGATTTCTCGTGTTTAAACAAAAAGACTATAGAAGCATGAGTTGAGGACTCAAAACGAGGCAGACACTTGCTTGGAAGCAAGAGTGAATCACGATTACGTTCATATCTAATAAGATCTGCCCTCCTCTGTATCCTCAGATGACATGGAAGTCTGGCTGAGTCAGGCTGGTCACCTCACCCATGGGAAACTTGGTTTTTTAGACTAGAGAAATTAAAGCAATATTTGCCAGGTAGCTTCTCATAAAACCTATCTATCCAGTGAGAATCCATGAGCTCATACTTTCAAATACTTTGAGTTTCTTAAGACAAGCACATACCCTATCTTTGTTGAGTCATTAGTTCTCAACTAGTTGTAAGTATGCACCCCGGCAGGCATTCAGGAATATCTTGGAGATGGTTTTCATTGTCGTCGGGTTCAATGGTGTTACTGACATGGATAGATAGAAATGGAGATCCTTGTAACCATCCCACCAATCATAAGATGCTCCCTACGCAGAGACTATCTAGCCGAAAGTGTCAAGCCTGCCAAGGCTGGGAAGTCGTGCTTTCTGTTTAGATATTATTACATTTTATTTTTAAGTTAATTGGGGTTTATTGCATATTTGGGTGTTGTTTCTTTTGTATTGTTTTTCGGGAGTAGTTTAGACTCCTAAAGACCATTTGAAATGAAAAGACTATCTTCAGGAACTTGCCTTACAAAAATGCATGTTAACACATTTCCAAGTCACAGTATTTGCCCAAGCAAATGCATTAGATTCCTGGGTGATCCATAACTTCTTCTCGGTCTAATTGAGTGCAGATGTCACTCCGTGCACACCCCAAGTATCTGGGTGGCACTCACCTTCATTCCTTAGCCAAATTCAGAACCTTTCAGCTGCCAGGCACATCTTGAAGTATGCTGGTTACTCCCCAGCACCCTGCAGATAAAGTGACTGGGTGGTCTCAGCAAGTCAGCTAATATACAGCTGTTCATTGGGGACTCCACAGCACTTCTAAGAAAGCGCATTCACTTTCTGTCTGGGATGTATACCCTGCTCCAAAGGCTCTCCATTCTTTCCAACTTTCAATGCTGGGCAAAGGACTGCCCCCTTCCCCCACCACACAAACACACCTTGATGCCTGTATAGACTTTATTGTGGTACTAGGAGCACCAGCTCTCTTCCATCCACTCCATCACTGCGTCAAGATTCTCAGCAGACAGTCAGAAGCCACGACATGGCTGCACAGAGACCATGAAATGCTGAAACAGCACAGCTAAGAGCGCGGGGGACGATTTCTGCAATTACTGCTCTGATACAAATGCATTTGTACACGAAATGCATTTGTATGCGCATATTTATCCCTGTGTATATTACACAGTCAGACATATTTACAATTTATCTTTGCACATATATTTTTAAAAATCATCTGTGTCAATTGCAGTGTACATCTTGTAGATGGCACACTCCACATCTGCATGCTTCCATGGATGCCATGATCCTTGGCATCAGGGTAGCTCTTTGGGAATTTCTCCTGTGGCCCAGTTTGGGTAATGATTACCAATAGACCCTCAGCCAGGCATACATACATAGTATGTGTGACTAGTAGTTCATGCTATCTGAGAATGGGCGAGAAATAAAGTACCCAGGCTTCAGACTCAGCACTTTGGGGTCAAGGAGCTTAGGAAGTCTGATAACATGAGGACAGCTATTGTGTAGGTTCTTGGTTCTGATGCCCACAGAACAAGATGCAGATATTGCATTGGCTTTATTGTTTAGGCTTTGCGCCTGTGACTACAGACATGATCTGAGGGGGCTACAACTCATATATCGAAGTCTAGGTTGACTATACAAGCGCAAGAATGGGAGCTGCAATTCATACTGCTTCTCCCATAGTTGGGAGGAAGGGGGCGTTTCAAAAACAAAGTGCTTTAGTAATGGAAGGAAGTTCAGGCCAAAGTCTAAACTGCACATGACGAAATCTTATGCCTGTTTTTGCTAAGATTGAACGTTTCTAATTCCTTCCAGATAAATTATATAGAAAAATATGTGCCAGACAAGTTACAGTCTGTTAGTAGATATTTCAGTCCCTCCTCAACCCATAAAGATAGCACTTTCTTTGCATGGAAAAGCAGGAATGAGAAGTGGGCTAGAGGAAGCAGCAGCATATATAGAAATATAGTTACAGAGCTTTTTGCATGAGGATGCAAACTCCCCAGAACACAGGAAAATGGAGACAGTTCTTAACTTGGGGTTGTTGCCAAGATTACAAACACCTGGTTTCCCTAAATGGCTCTTGCCATTGACATGTGATGACACAGTAGACAGTTGTATATCAAGTTCCACGGCAGGGTGGAGAATACACTGCCTATTAAGTGGCTGTTCTCTGGGTGAAAAGAAAAGGTCTTCTCCTTTCCCTGGCTGCGGATAGACAGTTCTCTTGTGGAGCTCAGATCCCTGTCTTGGGAGAAGAGATAGAAAGCATCAAACAGGAGGCTGGGTGACTCCCTGTTGGTGGTGGCTGTCAGGAGAATCTCAGAGCAAGAAAGATCACAGGGTTAGAAGTCACAGAGTGCAACTGACCTGGGTCCCCGAGGTCTCTCCTTTACCAGGCTAACGTCATGTTTTTAACCAAACCTTGCACGCCGAGCTTTCTTTCCTATGCGCTGAGCTGCCCGCCGATTTCAGAGCTCTAATTAGTTTCATAAGCCCTGGTATTCAGGGTAAGCTTGGGCTAGGTTCATCCCATGGGAGCCTGTGTGGATGGATCTAAGGCCAACCAGATGGAACTTCCATCTCTGGCAGGTGAAAGCCCATGTTAAACTCTCCTTCTGGAGGCTGATTTTAAAAATTCCTAGAGGCACTTCATGCATGCTTGAAAATTCTGGGCCAGGGTTCTGCTTTGTCTTTCTGTGCTCTGGCAACTGGTGGAAGACTGGGCTATTCACACATAATCCTGCAGTCTTTGAGGTTTCCTGAGCTATTGCCACATAGCAAAGAAGTTTACCTCGTTTCTAGAAATGGAGAGTATCTATACACCGCAGGAGTCGTTGCCTCTATGTACTCTCCTGCTGTGTGATGCCCCCAATGTGCAAGTTGAATTCAGCAAAGCATATATAGAATCCAGAAAAGGTACCCAGGTGCTCTATGGTGGTGGCAGAAATATCATTGGCCAACCAGTATCGGTGACCATATTCTTCATCCTTTTGGCCTCCTGGTCAACCCTAGACTATTAGAGGCATGAAGGAAAACTCCTAAGTAGATGGCACTAGAATACAGCTCTCCTGCTTTCAGCTTAAAATCACTAGCCAAAAGCAGTCTTCATGACAACTTGGAAGGAGGGATGACTTCATGTAACAGCAACAGTGTGCACCCTCTTGCTTGCTCTGTTCTTCATGCTACTAACCAGGCTCTGTGGATGCTGTTTTTGTCTTACATTTGATTTGGGGGGTTGCTTTGCATGTCGTTCTCCTCTTGGCTGTTGGTTGCAGGGTTGATCCTTTTCCTTTCTGTGATTCAGGTGCCTCACTCTTTCCTTTCCAGGTTCTTCCAGTTCTTTTAACATGTCAAACTCTGGAGATTTGTTCATGAGCGTGCAGTCACTCAATGGGGATTCTTACCAAGGGGCCCAGGTTGGAGCCAACGTGCAATCACAGGTAGGGACCCAGCCAATATGCCACCAGGTGGATTCAGTAGAGTGTACCAGCCTTCAGTTTTCTCAGCGTCCTGCTCCTGTCTGGACAGAAAGAAGGAGAAAGAAAGGGAGGGAAAGGCAGACAGGCAGTAGTCAAATCAAATCAGAGTAAACTGAAACAGAACAAAGACAACCATTATCATAGGGGATGGTGACCATGCTTCGGCTCTGGCTTGTCAGTCACACTAGGAAGGTAGGAAAGGAACAAACACAGAATGAGGTGAAGGAGGCCTGTGAGATGGGGGGAACTGGAGTCTCCGTTATTCATCAGAGGAAAAGGAATTTCAGCCCATTATCTCTTCCACGTTTCCCTCTCATCTGTTGATGTCCCATCTTCAGGATTTGCTAACATCGAGAAGTCATCCAGGGTCAGGCAGATGCATAAGTATGCCCTGCTTTCGTCTTAAGCTTTAAAATTACCAAAACCATCTTGACTTAACACATACACTTAGTCACCCTTGAGGTCAATGGACTCGAGTTTCTGATGATAAAAGCATAAATGGAACCAAAAATCAAGTCATGTGCCAAACCTCTGTGCTTCTTAGTGTAACCATCTACCTTCAAGACAGATACCTCAGGAAGCCATCCTGCTATCTCAGCATGAAGCGTGGTCTGAGAGATTGAAGTCATATGCTCTGGGTCACAATGACTTGGGAAGATAGGAGTCACATCTCCTTATCTGACACATGGAACAGAAAATGTTACATGCCTGGAAGAGAAAGCTGGCTGGTGACTCAGCCCCTTGTATAGGAAGCACTGCCTAGAATCAAATTTGAGGTGATACAGACAGGTTCTGGTCATGTGACTAAATGACTTACCATCATCAAAATACTGATTTAAAAAGCAAAAAACCAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAACCTTGGGTCTTTATCCCAGTTCCCTCTCTCTATGACATGGCTGTCCAAGACTAAAGAAATACCTCGACTTGAGTTGCACAAGATAATCTATAGGGAAGAAAGTGGGGGAAGGAGACGCTTCTGTCCTCTTCCCTCCATTTCCTATAGCTCCACAGCTCCCTGTCCCCTCACACAGCCTTGTGCAGTCTGTCTCAGTTTCAAGTTTCTTTTATTATTTTTACTAAACTCATAAGTGACAATGGATTTGCCATCCGGGGGAGTCCCAGCCTCATGCTTAAGACTTTCCCCCAGGAAGAGCATCTTCAAAATCTTCACTGTGTGGCATGTCCTATCCGTGCCTGTAAGAAGATGATGTGCTGTGTGCCTTTCTCTCTCTGACTAATTGCCTTTCTGTTGTTGTTCCTCTGTCTAG
Seq C2 exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCCAGTCAGATGTACAGTCCGCAGGGCATCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052534:ENSMUST00000188912:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.629
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NA
C2:
PF0004624=Homeobox=PD(4.1=6.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types