MmuINT0116726 @ mm9
Intron Retention
Gene
ENSMUSG00000009030 | Pdcl
Description
phosducin-like [Source:MGI Symbol;Acc:MGI:1914716]
Coordinates
chr2:37205594-37211337:-
Coord C1 exon
chr2:37211156-37211337
Coord A exon
chr2:37207903-37211155
Coord C2 exon
chr2:37205594-37207902
Length
3253 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTGTCTTTGTTTTCATGCAGATG
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTCCAAAAGGTGTGATCAATGACTGGCGCCGCTTCAAGCAGTTGGAGACAGAGCAGAGGGAGGAGCAGTGCCGGGAGATGGAGCGGCTGATCAAAAAGCTGTCTATGAGCTGCAGGTCCCATCTGGATGAAGAGGAGGAGCAACAGAAACAGAAGGACCTCCAGGAGAAAATCAGTGGGAAG
Seq A exon
GTAACAGCTTCTTCCCTGGCTGCTGGAGATGGGCGTGGTCATTCAAGAAGGGAGGAAATTAGATTTGGCTTCTGAGATGGATTGAAGTGCAGGGCAAAGCTGGGAGCCCTGTCATAACTTGGGGTGCATCTGGGTTTGTTCTCAGCTCAGCTATACGTTGTTATGTCAAAATCTCTTCTTAGTCTTTCATTTTCTAAATGAGGTCATCACCTTTATCTTCCCAGGGTTCTGCAACTCAAATAATCTTCTTAGGGACTATCCTTTTGAAAGTGTGGAGATATATATTACTTTTAAAAATTATATTCATGAATATTTATTTTGTGGAGACAGTAAATAGAGTAGACATTCTGAGAGATACTTGAGCCCAGGTTCCTGACACCTCCTTATCTTGTCAGCATTAAAGGTCCCCCTTGTTCCTTCTGACCATGCAAGAAGTGTCCCGGAGTGCCTAAGATCAGTTAGCTGTGGCTTATAGCTAAAAATATCAGTCACTGGGGCCAGAAAGAGGGCTCAGTGGAGAAAGGAGCTTGTTATGCAAGTCTACGACTTGAGGTCAGTCCCCAGGGCCCCTGTAAAGGTGGGAGGAGGGAACTAGCTTCACACTTGTGCTCTGACCTCCATCCACATGTAGAGCATGCGCACACAGTAACAGCAAATTGACATTGAAAAGTATCAGCCAACATGAAAGTGCAGATAAGCATTAAACTAAGTTGATCACTTTGACTGGGGAATGATTTTAGGTCATAAAACCTAGACAAAAGCTGTATCACCTAAAAGACCCAGTCACATCAGCTAGGCGGGAGAGTCTCAAGTTAGAGAGATGAGAAGATTGGTAAAGAGAATTCAGAAGGGTGCTGGTTATGACCTACTGACCCACTGTTCCAGTTTAATGAGGTCCTGCTGTTGTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCGACATTGCTGTTCATCACCAAAGGATGCAGGACTGGAACTCAAGCAAGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACTGGCTTGCTTCCCCTGACTTGCTCAGCTTGCTTTCTTATAAAACCCAAGACTAGCAGCCCAGAGATGGCACCACCCACAAGGGGCCCTCCCCCCATCCCTAATTGAGAAAATGCTTTACATAAGTTAGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACAAAACCAGCCAGTACACCTGCTTACCACCTCTAGTCTATACAGTGTTTGAGATGTTTTGCTGCACCAGGCCAGGAGAAAGAAGATGTCTGTCAGGGAAACTGGCTATAGCACAGTGTGCCTGCTGCTAATAGCCATTAAGCAGAGACACTAGAATGAAGCAGCAGTCATGTAGGTCAGATGTAAGAGATTCTGTCTCTGTCCTCTTAAGTCACCTATAGTAGACCAGAACTGGAAACTGCCTGTCTGGCAGAAATGAGGCTGGGGGAAGGTTAGTATGATGCATATATATCAATTTTTAAAAATGTTTGGAAACATGAGGAAATATTTATAAATTATCATTATTATTTTTTTTTCCTTTTGGGACAGAGTCTCACTGTGCTGGCCTAGAACTCACTATGTAGATCAGGCTGTAGATCATACAGATCTGTCTGCCTCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGGTGTGAGTTCCAATGCCCAGTCATTATAAAGTATTGTTAACATTGCCTAGAGCCAAAAGCAGATACCCATAGCTTCTGCTACTCAAGTAAGACAACTACAGTCAGCTGACTGGCAGTAAAAAAGCTGGGCCTGGTAGTACATGCCTGTAATTCACTACATGGGAGGCTAAGACTAGCTAAGGATTGTTTGTTTGAAGCCAGCCTGGTGTATATAGTGAGAACCAGGCCAGCCTGTTCTACATATGGAAATCTTGTTTCAAAATTGAAAAAAAAAAAAAATTGGGGCTGGAGAACTGGCTCAGTGGGTAAAAGCACATGTTCTTACAGAGGACCTAGGTTTGATTCCCAGCATCCACATAGTGGTTCACAAACGTCCATGACTCTAGTTCCAGGAGATCCAGGAGATCTGATCTCCAAAGGCACCAGGCACTCATTTGGTACACATAAATATATGCAGCAACACGCACATAAAATGAATAAATCTTAAAGCAATTAGAGTTTGTGTTGTGTGGTTGTGTGTACAAAGCAGCAATGAGGTGTGTTCCTTTGGAAGTTCTTTAATTATGTTGTCTTTTCAAAAAAAGTGTAAGAGTGACTTAGTCAAAACTGACAGAGGGAATGTTCATCAGAAAAGTGGTGCTATGTGGTGCTGCCTTTTTGGAATGAGAAGCAAAATGGTATTGTAGTTAAAAACTCGAGTTTTTAAAATCTAGTTTAAGGGGCTAGAAAGCTGGCTCAGATTAGGCACTGCTCTTAGAGACCCCAGTGTGGTTCTCAAAACCCACAAGGTGACTTCTAACTCTTCCTGGGAATCTGACACTCTCTGCTGAACTATGTAAGCACATCCATACCTCCTCACACAGACACATAAATACACATCATTGAAAAAAAACTAGATCTTTAAAAATTCTACTCTTGTACTTTATACTTGTGTGAATTTGTGCAAATAATGTAAAATCTTTGGGTTAATACCTACATTTAGAAAATGGGGTTATTAAAGTTCTTCCAATGAGATTAACTCAAGAACCCAGTAATAGGTGAATTCAATTATTATAGTCATAATTACCACATGGTAGGAGAGAAGTAACTCCTGCAAGTTGTCCTCTAACTTCCACAGGTGCACCGTGGTATGAGCATGCTCCCCTTCCCCCACCCCCTGAAAGTAAAAGTAATTAAAAAAATTTCCAAGAGGAAAATCTGAATCTCTGGAAAGAGATTCAGTTGCTAAAAGTACTTGTTTTTATAGATGACCCAGGGTTGGTTCCCAGCACCCATGTGCTGGCTTACAACTTAACACCAGTTCCTAGGGACCCAGTGCCCTCTTCTGGCCTCCACAGGCACCAGCGTGCACCTGGTGCACATAAAATACACTCCATCCATACAAATTTTGAGAGAGATGACATAATATGAATAAGACACTAGTGTGAAGTCTCATGTGTTCTAAGTACAGGGTGCAGATCCACGTTGATCAAATGTGTTCTTTGCCTGTCTTTGTTTTCATGCAG
Seq C2 exon
ATGACTCTAAAGGAGTTTGGTACAAAGGACAAGAACTTGGATGATGAAGAGTTTTTGCAGCAGTATCGGAAGCAGAGGATGGAAGAGATGCGGCAGCAGTTTCATAAAGGGCCCCAATTCAAGCAAGTTTTTGAAATCCCCAGTGGAGAAGGGTTTTTAGATATGATTGATAAAGAACAAAAAAGCACACTTATCATGGTTCATATTTATGAAGATGGCGTCCCAGGGACTGAAGCCATGAATGGCTGCATGATCTGCCTTGCCACAGAGTACCCCGCCGTCAAATTCTGTCGGGTGAGGAGCTCAGTTATTGGGGCCAGTAGTCGTTTTACCCGGAATGCCCTTCCTGCTCTGCTCATCTACAAGGCGGGTGAATTGATTGGCAATTTTGTTCGAGTCACTGACCAGCTGGGGGAAGATTTCTTTGCTGTAGACCTTGAAGCTTTCCTGCAGGAATTTGGATTGCTCCCAGAAAAGGAAGTCTTGGTGCTGACATCTGTGCGAAACTCTGCCACCTGTCACAGTGAAGACAGCGATCTGGAAATAGATTGAACTGATAATCTAGTTCCGTAGCTATCTCATTGTTTGGGCTGGAGGACACATGTCTGTATTTATTTCTGTCCTTCCTGTGTCTTCTGGCTTTACAGCTGTTCTTTGTAGTCTCATTTAGTATGTGAAAAGTCAAGAAATTCTTAGATTAAATCAGAATGCTGACTCACTTTGTAGCTAGCAGTAAAGTGACTTCAAATTATATAAGCAGGAAACTAGGTTCTTGAGCTGTTTACTTCTCTAGCGTGACATCTCTGATACTGTTTCCAGTCAATATTGACATGGCACCCTTGCAGGCAATGTCTTGAAAATTGTCTTCTGATGACCTCAGAATTCTACCAGTTCTGAGAGTAGAATTCCCTAGTGAGTGTGTTCTGTGCAATGTAAACAGTGCATTTCCATAATCACTTGATTGCAAATCATGTTTACTTGCAATCAGATGCATAGCTGTACTTTTTTTCTCTAGATCTGTCTCTACCAGGGTCCATACAAGGTTGGGAATGTAGCTCGGTGGTGAACTCTTACTATGCACATGGCCCCAAGATACCTGATTCCTAGCACTGTCAAGACTAAAGGTTCCAGATGGTGCCTGGTGCTGTAGTTAGCAGTGGCCTCTGCTGTGGCGGTCAGTGGTCCAGTCCAGCATAATGAACAGGAAAGGATGGTTTTTGCTGACTGCTGTCATGTTGGGAGGCAAGCATCTTATTGACTGACATTGGTGTGTGTGGAGCTTGAAAACCTCAGTGGGAGGATCTTTCTGTACTCCTGCTCATCAGTATCTCTTCCTGTTATTAACAAGGCGACTTCTTGTTTAACCTCAGCTTTTTTTAAATGCTTTTTTGCCTATTAGGAAAAAAAAATCATATTTAGTAGAGGAAAATTGGCCAAAATAAAGATGTAAAAATGGTTTAAAAATGTAATTCTGCCACCTAAATACTATATGTTTTGGTATAGTTCATATATAGGTTTTTTTTTTTTAATGTATTCATTGGCTTTTGTTTGTCTTTAAATGACACTGGGATAATTCTGAGCATAGTGTCTGATATTATGGTCAGCTACTAACATCAGATGTTTTTCATGTTATTAAATACTCTTCTGTAACATTTTAATAGCTGTTGATATTTCCACTGATAGATATACTGTAATATGCTTGGTGGTTGGTTTTTAGAAAGATGGCAAACTTTTTTATTATGAACCTTTTATTATGAAATGTGTCCCTCATAGAACATACAATAAAAATTAAGCTAAAAAGATATTTAAAAGCCATACAGTTTTACTACTGATAATTATGTCACCATTTTTATAGATCTCTTTATAGCTTTATGTGTATGTGTATATTTATAAAATTCATTGTCATTCAAGTTTTTTTCCTTTTAGTTATTCTTTATATGTTCTTGTGTCAGTGGAGAAGAAATGTAGTCTGGAAGTAAATATTAGCTTTAGTATGCACACTTGAGTTTTTTGGTTGCTCAGAAACTAACTGTAAATGAGTCTTGAAAGTGTCTGTTGGATTTAATCAACAAAAACAGTTGTCATTTTCTGACTAAGGAGCTTATTGTAGAAGTGAAGAAAATCATTAGGAACAGAGAAAGCTGATGTAAGTATTCTAGTTTTTTTCTTTCCAATCCTTCTGTCCCCATTCTTAATAACATTGATAGTTACTGAATTCTGTGTCCTACTTTATGTAATAGTACATACTAAAATACTTTGCTATATTGTAAAAGTTCACCATTTAAATAAATCATACCATATTGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009030-Pdcl:NM_026176:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF0211411=Phosducin=FE(22.6=100)
A:
NA
C2:
PF0211411=Phosducin=PD(67.9=97.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: