MmuINT0116870 @ mm9
Intron Retention
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108650124-108650442:+
Coord C1 exon
chr7:108650124-108650176
Coord A exon
chr7:108650177-108650367
Coord C2 exon
chr7:108650368-108650442
Length
191 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
CTCTGTCTGTCCCCCTGCAGCTG
3' ss Score
12.53
Exon sequences
Seq C1 exon
GGGAACTCTTTGACTTGGATGCTACTTCTCTGCAGCTCAAAGTCCTTCAATAT
Seq A exon
GTGAGTCCCTGAGCATCTATCTCCTCTTCCACCCTCTCTCTCTCCAAAGACCAACAGACCCTTGACCCCATCACCTCTGTTCAGATTGGGACACCCCACCCTCTCTTCTCTTCTACAATCCTGAAAAACCCAGAGAGGCTAGCGGGTGTTCCAGCCCCGCCCTCAGCCTGGCTCTGTCTGTCCCCCTGCAG
Seq C2 exon
CTGCAGCAGGAGACACAGGCCACTCACTGCTGCCTCCTGCTGGTGTCGGAGGACAATCTACAGCTTTCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-Pde2a:NR_026574:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134921=GAF_3=PU(9.0=72.2)
A:
NA
C2:
PF134921=GAF_3=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACTCTTTGACTTGGATGCT
R:
GGAAAGCTGTAGATTGTCCTCCG
Band lengths:
122-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: