MmuINT0117737 @ mm9
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87555032-87555436:-
Coord C1 exon
chr3:87555362-87555436
Coord A exon
chr3:87555278-87555361
Coord C2 exon
chr3:87555032-87555277
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTTCTTCCTTGATCTCTTAGGTC
3' ss Score
11.34
Exon sequences
Seq C1 exon
GCGCCAGCCACCTGGACCGAAGCTATAGCTGTAGCTATAGCCACAGGAATGGCCCGGGACCATTCTGTCATAAAG
Seq A exon
GTATGAGTGCAGAGACGTGGAGGGGAAGGAAGCCAGGGCCTCCAGGGCCTCCAAGGAGCCTGATTTTCTTCCTTGATCTCTTAG
Seq C2 exon
GTCCCATCTCTGAAGAGGGACTAGGGGCAAGCGTTATGTCCCTGAGCAGTGAGAACCCCTATGCTACCATCCGAGACCTGCCCAGCCTGCCTGGGGAACCCCGAGAAAGCGGCTATGTGGAGATGAAAGGACCTCCATCAGTGTCCCCTCCCAGGCAGTCTCTTCATCTCCGGGACAGGCAGCAGCGGCAACTGCAGCCACAGAGGGACAGTGGCACCTATGAGCAGCCCAGCCCCTTGAGCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-Pear1:NM_152799:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGGACCATTCTGTCATA
R:
GGGACACTGATGGAGGTCCTT
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: