DreINT0094988 @ danRer10
Intron Retention
Gene
ENSDARG00000017229 | megf10
Description
multiple EGF-like-domains 10 [Source:ZFIN;Acc:ZDB-GENE-080506-1]
Coordinates
chr10:16194652-16197836:+
Coord C1 exon
chr10:16194652-16194696
Coord A exon
chr10:16194697-16197629
Coord C2 exon
chr10:16197630-16197836
Length
2933 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TTTTGTTTTTATCTCTGTAGATC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GAGCTTATGGAGTTGACAGGCGCTACATGGGAAAGTCGCTTCGAG
Seq A exon
GTAAAAGATCATTTAGCAAGGAAAGAGTCTTTAGCAGATGGAAGGAATTATGTCATCATTTAATCTCTTTTGTCTTGATCCAAACATGAATGCATTTTTTACCATGGAAAATGTGATTTGAAAGATTGTTTTCAATAGGGTTAATGGGGTCTGATGCTTTTTTACATTTCAAATGTCATTTTTTGGTAACACGTTACAATGTCAGGACATAAATAATGATGTACTGATGTTTAAACTAAATGTTACTTCATTATGAACTGACACACTAAACCACAGAATAGTATTTTTTTTAATTTGGAAAGTATTTATTTATTTATGTCTGCTTTATGAATACGTTAATGTGATACTTCAATTTTGAATACAATGAAACAGTGCCTTGAAGCCCAGGCCACAGAAACCACTGGATAGATTTGAAGAGAAATATTTAAATGATGCAAAACAGGTGTTTATTATTGTACCTTGGTGCCTATATTCTTCATAGAGCAAGTTTATATACAGCTGGTCAAATTATTAGCGCTTTTTTCAAATATTTGCCAGATGATGTTAAACAGAGCAAGGAATATTTCACTGTATTCATTAATTTTCATTCGACTTAGGCTGTACTAACACTAGGTAAAGTTGCCTCGAACCGGGCCAAAGCACGCTTGTCCCCCTCCTGTCTCCCCCGACGGCCCGCACTCACACCACAATCGGGCCTCGGCACGCTTACATCATCGCTGCTGTGCTGTTCAGTGAGAAGCGCCAAAGCCTAAGTGAACCGCGCTCAGGCCCACCTCTTCCAACCGGGCCAGGGCCGGCCAAGTGAACCGTGCTTGAGCCCGATTCAGCGCACTAACACTTCTCAAACGATCTGGGAAATGGGCCTGAGTACGGTATGGATGGCATAGTGTGAATAGGCCCTTAGTCCCTTATTTATAAGGGGTCGCCACAGCAGAATGAACCACCAATTTCTCCAGCATACTGTATGTTTTATGCAGCAGATGCACCTTCTTGCTGCAACTCAGGACTGTGAAATTCATTCACAATATTTTCTATTATATTTTTTCTTCTAGAGAAAATCGTTTGGTTTTTTTTTTTTTAGCTAGAGTAAAAGCAGTTTTTAATTAACAAAAAAACGATTTAAGATCAATATTATTAGCCCTCTTAAGCATTATATTTTTTTTAAGTCTACAGAACAAATCATCGTTATACAGTAACTTGCCCAATTACTCTAATTTGCCCACTTAACCTAATTAATCTAGATAAGCCTTTAAATTGCACTGCATACTAGTATCTTGAAAAATATCTAGTAAGCAATTATGTGTATCATGGCAAAGAAAATAAATCAATCATAAAAATCATTAATTATTAAAACCATTATGTTTAGAAATGTGTTGAAAAAAACATTATGTCCATTACACACAATATGGGGAAAACAAGTATATAGATGGGCTCGTATATTACGATGGGCTCACTCACAAACGCAGAGATCTCAGGAATTATCAAAAACATGTATTTATTTACAAAAGCACTCACAAAAGGCACTAGAACATCAAAACAGTCAGGACAAGGAGTTGGTGACAATACAACACCAGAACAAAGAATAAACTGAACTTAGGGGTATAAATACTCAAGACATGAATAAACTGAATGCATACAGGGGTGTGACTATTAAATATATAACTAACACTACTAATAGATGTAACTATTAAACATTAAAAAACGGTGGGAAAACAGAACAAAGGAAACACATGACCTAAACAGAAGCACATGGCACATCAACAACTACACAAACACATCACAGACACAACAAACTTGTGACAATATGACTCATGTTGTAATTAATTAAGGATAGTTTTTGATTATTACAAAGCCCTAATTCACCATTCGTTTATAATAAAAAACATTTAGTTAAAATGTTAAACATCATTTGGTATGAACTGTTATTGTAACATATTACCAACATAAAAGAATACTATAACACTTGTTTTACTTGTACTTGTTTTTGATCATATATTTTCTTCTGGAGAAAGTCTTATTTGCCATATTTTGGCTAGAATAAAAACAGTTTTAAATATTGGAAAAGCCCTTTTAAGGTCAAAATTATTAGCCCCTTAAAGCATATTTTTTCAAGTCTACAGAGCAAACCATTGTTATATTCTGACTTCAACTGTACGGTATATTCACGCTCCATTCACACAGGGCGTCAATGCTTCCCATTCACTTTGAAAAAGTGAAGTCAGGCGTTGCCAAACTGCATTGTGGATCCTTTGGTGCCGCTTCAGAGGCGTTGTTCGCTGCAAAAGATGGGACTTGCTCCACTTTTCAAGCAGCGACGGAAGCATCAGCCAATCAGATCGCTTTATGCAAATACACCAGCTCAGACTGTGGCCTATTGCCGACTAATTTCATTGGCTAACGCTGCTATGATGATCGCGTCAGTCCCAACTTCATGTGTGAATGGGGCGTCACTGTTCAATAATAAGAATTCTATATAGATCAGTGGGTATATTAAACTGTAACACATCACAGTTTACTGTAGTAATAACTAAAGTATCCAACAGTACAGTATTACTACAGTATGCTGTTGCATTCATTGACATACTGTTGTAAATACACTCTTAGAAATAAAGGTACGCAAGCTGTCACTGGGGTGGTACCTTTTCAAAAGGTACAAATTTGTACCTAAAAGGTCCATATTAATACCTCAAGGGTACATATCAGTCCTTAAAAAGTACCAAAGTGTTCCTTTTAAAATTTGTAGGTACTAACATATACTTTTGAGGTACCAATATCAACCCTTCAAGGACAAATGTGTACCTTTGGAAAAGGTACAAAAGAAAGGAAGTAATATATTTCTTGAATATAGGTTGAGTAAATGAGGACAGTGTTGATTTTGAGTGGACTGTCTCCTTTAAAAAGTTTCATGAATGGTTTTGTTTTTATCTCTGTAG
Seq C2 exon
ATCTTGTGAAGAGTTTGCCCTATCATGCCAGTTCCTGCTCTCTGAATAGTTCAGAGAACCCATACGCCACCATCAAAGACCCTCCCCTGCTGTTGACCAAGAGCACTGAATGTGGTTATGTGGAAATGAAGTCTCCTGCTCACAGAGATTCACCATATGCTGAGATACATTCCTCCAGCCCTGCCAACAAAAATGTCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017229:ENSDART00000043936:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.348
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]