HsaINT0101782 @ hg19
Intron Retention
Gene
ENSG00000145794 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:29634]
Coordinates
chr5:126790258-126791299:+
Coord C1 exon
chr5:126790258-126790302
Coord A exon
chr5:126790303-126791092
Coord C2 exon
chr5:126791093-126791299
Length
790 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
CTTCTCATTTCTCTTCACAGACC
3' ss Score
11.5
Exon sequences
Seq C1 exon
GTGCTTTTGGACTTGACAGAAGCTATATGGGAAAATCCTTAAAAG
Seq A exon
GTATCATGTAAATTTGAAGAAGAAATCAGAAGCACAATTAAATTTTTTTTAACCTCAAAGACTGAAATAGTTTTTAAACAAGCTAGAATGGCAAGAGAAAATGTAGAATTTTTAGTGTGGTCAGTTACTACAGCAAACACACAAACATGTGTGACTGACATCAAGAAAGTGACCAGAGGTGGTCCTTGGTAGAGCTTAAGTCTTTGGGGAACAAAAGATTCAGTTTGCTGAGGAAACACTCATATTTCATTTAAAAGAAATATGGCTTATGGGGAGACGGAAACATATAAAGGGAAATAGCCGGGACAATAAGAAAAGATCCACATGGTTACATGTTGACCAAGTTCTGCTGTTCAGGATGGGTGTGCATGATTAGATGCCTAGTACAGAGCTTTTACTAGGAGTCCTCCCAGCACAAATGCCTTCTTGTCATGATAATAGAGCCCTCTTGGTGCTCCTGGGGCCATCAACAGCTGGTTTCTTGATTGAACTTCTGTAAATTTTCTATTAATAAAACAAAACGTAATTGATTATATTCTAATGTGATCATAAAAATGAAATCAGTTAATGATATTGATGTCAGTACTCATCTTGGAGAGGAGCTAAAACTACTTTAGGGATGGGTCATTTTATAGCAGATTCTCTCCAAAACAAGTGGAAAAGGTACAGTATTATTTTCAGTGTGTAGAATTATGGAAACCTAGCTATAAAGAAAAACAGTAAAATATCACCAAGAAATGATGTTGCCAGTGACACAGCATTAGCTTTCTCTTCTCATTTCTCTTCACAG
Seq C2 exon
ACCTGGGAAAGAATTCTGAATATAATTCAAGTAACTGCTCCCTAAGCAGTTCTGAGAACCCATATGCCACTATTAAAGACCCACCTGTACTTATCCCGAAAAGCTCAGAGTGTGGTTATGTGGAGATGAAATCGCCGGCACGAAGAGATTCCCCATATGCAGAGATCAATAACTCAACTTCAGCCAACAGGAATGTCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145794-MEGF10:NM_032446:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGGACTTGACAGAAGCT
R:
TTCATAGACATTCCTGTTGGCTGA
Band lengths:
246-1036
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)