GgaINT1017730 @ galGal4
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
multiple EGF-like-domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
Coordinates
chrZ:56267889-56268927:+
Coord C1 exon
chrZ:56267889-56267933
Coord A exon
chrZ:56267934-56268720
Coord C2 exon
chrZ:56268721-56268927
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGTATGTTTTCTTTTTTCAGATC
3' ss Score
9.94
Exon sequences
Seq C1 exon
GGGCCTTTGGACTTGACAGGGGGTATTTGGGAAAATCTCTGAAAG
Seq A exon
GTGAGGTTTATTTTCTGATGCTTCTAGATGAAATGACATTAATATTCAATGAACTCTTCTAAATTGTCTTTGGTTACAAGCCCACAGTTCCACAGTCTTCATCCTTACTGCAGGCATTTGGAAAGCTTATCAAAGCATGAGTGCACAGAGAGGAATTAAAAGCTTAGTAAATTCACAGCTGTAATTATTATTTTCATCTTTCAAGTTATCCAGTTTTCTCTTAAGACTTTATACGAGACTATATTAGTTTGCATCGCTTTTTGTTACGTGGTTAAGCTTTGACACGGGTGACTAGAATGTCTGGATATAGCCAAATAAATATGCAGACCTGAGCATCTGGTTTGTCACCGTTCTTACAGGACAAAAATGCTCAAGGAGTGCTTTGCTATATAATGCTACGATATATAGATGTTATTCACTTGTTTTGCAGGACTAAGGGAAGCCAAATTTAACTTCACATAAATGAGGCACAAGTTAATGAGCACATATCATCTGACAGGTTTAGATGAATTGAAGTTGCTCAGACATTTTGCTGATGGCAAGATTAAGCCCATATAAGAGTGGAACAGTAGAGATATTTTCACTAATTGCTTTATAAAGATTTTAGAGTGTTATGTCTACTTTCAATTTAAATACTCATAAGTAAGTGACTTTTTAAAACTCAGAATTAAAGAACATCTGTACAGTGGCAGAGCTTTGTAACAGTGACAATGCATTTTGCTCTGCTTAGTAGCAAAATCTATCCTTTGTAGAGTGCTTAAGGGAATAGTATGTTTTCTTTTTTCAG
Seq C2 exon
ATCTAGTTAAGAATTCGGAATACAATTTAAGTAATTGCTCCTTAAGTAGCTCTGAAAACCCATATGCTACTATAAAAGACCCACCGGCTCTTGTACCAAAAAGTTCAGAATGTGGATATGTTGAAATGAAGTCACCAGTGCGCAGGGACTCCCCATATGCTGAGATCGCCAGCTCTGCTTCAGCCAATAAGAATGTTTACGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTTGGACTTGACAGG
R:
CGTAAACATTCTTATTGGCTGAAGCA
Band lengths:
246-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]