RnoINT0091322 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52360617-52361564:+
Coord C1 exon
chr18:52360617-52360661
Coord A exon
chr18:52360662-52361357
Coord C2 exon
chr18:52361358-52361564
Length
696 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATTCCATTTCTCCTCTCAGATC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTGCTTTTGGGCTGGACAGAAGCTACATGGGAAAGTCCTTAAAAG
Seq A exon
GTAAGGCATACATTTGGAGAAGGATCTCAGAGCCCAAAATAATTCTTAAAACAAACAAAAGTGGATTTATCAACTTGGTCTAGAACCTTCTACGTGATAAGTCACTATGCCAAGATACAAACATGTTTGACAGACATGGAGAGAAAGACAATGACGGATCTGATTGGGAGCAAACGTTCTAGTTTTCTGAGGGAATACACTCACATTTCCTTTAAATTAAATGGTGTCTTGGGAAAGAGAAATGTGCTATGGGAGACAGCTGGAAATAAGAAGGGATCAGATGGCCATCTAATGACCACCCGCAGTGACTCTGAGCAACATGGTGTCCAGTACTATCCTGTGTTTCTGGACCCATCAACTCCAGGTTTATTGATTTAAAGGCTTGAATTAGTAAATTTTCTCATCGTATCAGAATAGAATTAATTGTATGTGGATGTGATCATCAAAACGAAATCAGCACCATGCCATTTTTCTCAGTAATCCCCTTAGAGGCGAGCTACAATTACTTTATAGATGGACAATTTTATAGCAAATTGTCTTCAGAATAGGTGGTAAGTGCACATTATTTTCAGAAAATGCCATTATAGAAATTTACCCATAAAGAAAAAGAAATAATCTGCCCAAGGAAATTATCAGCACGAAATGATGTTGCCCGTGAAACTACACTTACTCCTTTCATTCCATTTCTCCTCTCAG
Seq C2 exon
ATCTGGGGAAGAATTCTGAGTACAATTCAAGTACTTGTTCCCTAAGCAGCTCGGAGAACCCATATGCCACCATTAAAGACCCTCCTGCGCTCTTGCCTAAAAGCTCCGAGTGTGGCTACGTGGAGATGAAGTCGCCAGCGCGAAGAGACTCCCCATATGCAGAGATCAATAACTCAACTTCAGCCAACAGGAATGTCTATGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTTGGGCTGGACAGAAG
R:
TCATAGACATTCCTGTTGGCTGA
Band lengths:
246-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]