MmuINT0097620 @ mm9
Intron Retention
Gene
ENSMUSG00000024593 | Megf10
Description
multiple EGF-like-domains 10 [Source:MGI Symbol;Acc:MGI:2685177]
Coordinates
chr18:57451425-57452429:+
Coord C1 exon
chr18:57451425-57451469
Coord A exon
chr18:57451470-57452222
Coord C2 exon
chr18:57452223-57452429
Length
753 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
TGTTTCATTTCTCTTCACAGATC
3' ss Score
12.08
Exon sequences
Seq C1 exon
GTGCTTTCGGGCTGGACAGAAGCTACATGGGAAAGTCCTTAAAAG
Seq A exon
GTGCGGTGTACATTTGAAGAAGGATCTCAGAGACTGAAATGATTCTTAAAGCAAACAAAAGTGGACTTATCAACATGATCTTGAACCTTCTATGTGATAAGTCACTATACTAAGATACAAACATGCTTGACAGGCAAGGAGAGAATGCCACTGGCGAATCTGTTTGGAAGCAAAGATTCTCGTTTTCTGGGGGAATATACTCAAATTTTCTTTAAATTAAATGGTGTCTAAGGAAAGAGGAATGTGCAGTGGGAGATAGCTGGAAATAAGAAGGGGTCAGGTGGTCATGTAATGACCATCCACAATGACTGAGCAGTATGGTAGCCAGTACTGAAGTGTACTGCTCACTTCTATGGCACAAATGCCCTTCTCTCTGTGATAATAGAACTACCCTGTGTTTCTGGGACCACCAACTCCTGGTTTACTGATTTAAAGGCTTGAATTAGTAAATTTTCTCATAGTATCAAAATAGAATTAATTGTATTCGGATGTGATCATCAAAATGAAATCAGAGCCATGCCATTTTTTTTCAGTAATCCCCTTAGAGGCGAGCTACAATTACTTTATAGATGGACAATTTTATAGCAAATTGTCTTCAGAATGAGTGGTAAGTGCACATTATTTTCAGAAAACACCATTATAGAAAACTTACCCATAAAGAAAAAGAAATAATCTGCCCAAGGAGATTATCACCAAGAAATGATGTCGCCCGTGAAACTACACTTATTCCTTTTGTTTCATTTCTCTTCACAG
Seq C2 exon
ATCTGGGGAAGAACTCTGAATATAATTCAAGCACTTGCTCCTTAAGCAGCTCTGAAAACCCATATGCCACCATTAAAGACCCGCCTGCACTCCTGCCTAAAAGCTCCGAGTGCGGCTACGTGGAGATGAAGTCGCCGGCGCGGAGAGACTCCCCATATGCAGAGATCAACAACTCAACTCCAGCCAACAGGAATGTCTATGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024593-Megf10:NM_001001979:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGGGCTGGACAGAAGCTA
R:
ACTTCATAGACATTCCTGTTGGCT
Band lengths:
246-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: