GgaINT0060922 @ galGal3
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55314749-55315787:+
Coord C1 exon
chrZ:55314749-55314793
Coord A exon
chrZ:55314794-55315580
Coord C2 exon
chrZ:55315581-55315787
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGTATGTTTTCTTTTTTCAGATC
3' ss Score
9.94
Exon sequences
Seq C1 exon
GGGCCTTTGGACTTGACAGGGGGTATTTGGGAAAATCTCTGAAAG
Seq A exon
GTGAGGTTTATTTTCTGATGCTTCTAGATGAAATGACATTAATATTCAATGAACTCTTCTAAATTGTCTTTGGTTACAAGCCCACAGTTCCACAGTCTTCATCCTTACTGCAGGCATTTGGAAAGCTTATCAAAGCATGAGTGCACAGAGAGGAATTAAAAGCTTAGTAAATTCACAGCTGTAATTATTATTTTCATCTTTCAAGTTATCCAGTTTTCTCTTAAGACTTTATACGAGACTATATTAGTTTGCATCGCTTTTTGTTACGTGGTTAAGCTTTGACACGGGTGACTAGAATGTCTGGATATAGCCAAATAAATATGCAGACCTGAGCATCTGGTTTGTCACCGTTCTTACAGGACAAAAATGCTCAAGGAGTGCTTTGCTATATAATGCTACGATATATAGATGTTATTCACTTGTTTTGCAGGACTAAGGGAAGCCAAATTTAACTTCACATAAATGAGGCACAAGTTAATGAGCACATATCATCTGACAGGTTTAGATGAATTGAAGTTGCTCAGACATTTTGCTGATGGCAAGATTAAGCCCATATAAGAGTGGAACAGTAGAGATATTTTCACTAATTGCTTTATAAAGATTTTAGAGTGTTATGTCTACTTTCAATTTAAATACTCATAAGTAAGTGACTTTTTAAAACTCAGAATTAAAGAACATCTGTACAGTGGCAGAGCTTTGTAACAGTGACAATGCATTTTGCTCTGCTTAGTAGCAAAATCTATCCTTTGTAGAGTGCTTAAGGGAATAGTATGTTTTCTTTTTTCAG
Seq C2 exon
ATCTAGTTAAGAATTCGGAATACAATTTAAGTAATTGCTCCTTAAGTAGCTCTGAAAACCCATATGCTACTATAAAAGACCCACCGGCTCTTGTACCAAAAAGTTCAGAATGTGGATATGTTGAAATGAAGTCACCAGTGCGCAGGGACTCCCCATATGCTGAGATCGCCAGCTCTGCTTCAGCCAATAAGAATGTTTACGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTTGGACTTGACAGG
R:
CGTAAACATTCTTATTGGCTGAAGCA
Band lengths:
246-1033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]