BtaINT0091659 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27823346-27824834:-
Coord C1 exon
chr7:27824790-27824834
Coord A exon
chr7:27823553-27824789
Coord C2 exon
chr7:27823346-27823552
Length
1237 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
CCCTCTGTCTCTCTTCACAGACC
3' ss Score
14.18
Exon sequences
Seq C1 exon
GTGCTTTTGGACTTGACAGAAGTTATATGGGAAAATCCTTGAAAG
Seq A exon
GTATTGCCAGAATTTGTAGAAGAAATACATTTATCAGAATCACAATTTAAAATATTTTTTAATATCAGAGACAAAAATAATTTGTTAAACCAGCAAAACTGGCACTCCAGAGAAAAGGTAGCATTGTTACTGTGGTGTGTGCCTGCTAAGTTGCTTCCGTCGTGTCTGACTCTTTTGTGACCCCATGGACGATAGCTTGCCAGGCTCCTCTGTCCATGATATTCTCCAGGCAAGGGCACTGGAGTGGGTTACCATTCCCTTCTCCAGGGTATCTTCCTGACCCAGGGATCGAACCTGCGTCTCTTATGTCTTCTGCATTAGCAGGTGGATTCTTTACCACTAGTGCCACCTGGGAAGGCAGTTAGTGTGGTAAATTACTCCAACAAACCCACAGCCAGGTTTGACTGCCAGCAAGAGTGTGAACGTAAGTGGATCCTGTTAGACCAGAAGTTTTAGAGCACCAATATCTCAGTTTGCTGGGAAAACACACATAATTCGCCTCAAAGAAATATGGCTTATGGAGAGAGAGAAATATGAAGAAAGAAAAAGCAGGGAAAAGAAGAGGTCAGCCTGGTTACATGTTCACTGAAGCCAGCTTTTTGAGAAGAGTTTGAATAATAACTTCATATGCCCAGACCTGAGGTTTTACGAGGAAGCCGTACAGCACAGGTGCCTTCCTCACCATCAAAATAGAACCTCCTTGTGCTCCTGGAGCCAGCAACATGTGGGGTCTTGATCGAAGCCTTTGAGGATTCAGAGACTATTAGTAAAATAGAGTGGAGTTAATTTTATTTGAGTGTGATAATAAAAGGGGCTTTCCTGGTGACTCAACTGGTAAAGAATCCAGCTGCAATGTGAGAGACCTGGGTTTGCTCCTTGGGTTGGGAAGATTCCCTGGAGAAGGAAATGGTTACCCACTTCAGTATTCTGGCCTGGAGAATTCCATGGACTGTATAATCCATGGGGTCGCAAAGAGTCGGAAAATGAAATCAAATCCATGATGTTTACACTGATCCTCACCTTAGGAGCCACGATTACTTTATGGATGGGTAATTTTATAGCTGATTTTCTCCAAATAAGTGGAGAATGAATAGTATTCTTTTCCTTGTTAAAAATGATAGAAAACTAGATGCAAAGGAAAAGAAATAATTTGCCCAAGTCAATTAATCGCCAAGAAAATAAATGTTGTTGCCCATGAAATAGCATTTGCTTTTCACCCCTCTGTCTCTCTTCACAG
Seq C2 exon
ACCTGGGGAAGCATTCTGAATATAATTCAAGTAACTGCTCCCTAAGCAGTTCTGAAAACCCATACGCCACTATTAAAGACCCGCCTGTCCTTATTCCCAAACACTCAGAGTGTGGTTATGTGGAGATGAAGTCACCAGCGCGGAGAGATTCCCCATATGCAGAGATCAATAACTCAGCCTCTGCCAACAAGAATGTCTATGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329:ENSBTAT00000000434:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTTTGGACTTGACAGAAGTT
R:
TCATAGACATTCTTGTTGGCAGAGG
Band lengths:
247-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]