MmuINT0118687 @ mm10
Intron Retention
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78024961-78026028:+
Coord C1 exon
chr11:78024961-78025086
Coord A exon
chr11:78025087-78025884
Coord C2 exon
chr11:78025885-78026028
Length
798 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTTTTTCTTTGGTTGATAGAAA
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAACGGAG
Seq A exon
GTGAGTGATGTCCCAGTAGCTTTCAGCTCCTTTTTGAAGAGGGTTAGGGAGATGGGGATACGTGTATCCATTTGGGTAGAAGAATGGGAAAGAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCTCTCTTCTGGAGTGTCTCAGGACAGCTACAGTGTATTTACATATAATAAATAAATAAATAAATATTAAAAAAAAAAAAAAAAAAAGAATGGGAAAGAAGGCACCATCTCTTGTCTCTGCCTTCTGGGTTTACACAATATAACCAAAGAGGAAGAAAAGGAGAACACAGCTAAGCTGAACCAGTGGGAAAGAACAGAATCACATTAGGCAGCTCCCTTGGTTTGGGCAGCAAAACAAAACCAGGAGACTTGTTTCCATCTGTGGTGAACCCCAAAGTTAAAGAGAATAGAGATGGATTTCTCTGCACAGAGTGGGTAGAAAAGACTATATATAAGTCTATACCAGGCAACTTTGGGTCATTGGTTCTGCCTTTCTTTATTTAAAATTAGCCTGCCTTACTACAAGAAGCCACCGCTCTGGGTCCTTCTCACTGCAAATGGCACGTGAGATACCCATTTTCAGATCTTTGTTCCACTGTGAACTTTATATTGTTTGAATAAAAGTCACTTGCTGGATTTGCCCTGTCTCCCTTATCTGCTTCCACAATCCATTTCTCTCAGCTTTTTTTGATCTTTTTCTTTGGTTGATAG
Seq C2 exon
AAATCGAGATAAATATGTTGGATGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAGTACATCAGCTTTTCCCTTCCCGGGTCCAAGCTTCACCGGGCAATGTTGGGACACATCCGCTGGCTTCTGGAGGGCACCACCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791:ENSMUST00000049167:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.249
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTATCCATAGGAAGCG
R:
GTGGTGCCCTCCAGAAGC
Band lengths:
246-1044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types