RnoINT0110327 @ rn6
Intron Retention
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64819932-64820778:-
Coord C1 exon
chr10:64820653-64820778
Coord A exon
chr10:64820076-64820652
Coord C2 exon
chr10:64819932-64820075
Length
577 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTTTTTCTTTGGTTGATAGAAA
3' ss Score
6.04
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAGCGGAG
Seq A exon
GTGAGTAATGTCCCATTAGCATTCAACTTCTTTTAAAGAGGGATAGGAGATGGGGATAAATAAGTGTGTCCGTTTGGGTAGAAGAATGGGAAAGAAGGCACCTTCTCTTGTCTCTGCCTTCTGGGTTTATACAATACAATCAAAGACGAAGAGAAGGAGAGCACAGCCAAGCTGAGCCAGAGGGCGGGAAAGAGCAGAATCACATTAGGCAGATCCCCTGGCAGCAAAACAGAACCAGGTTGATTCCGTCTAGAAAACTCCAAAGTTAAAGAGAATAGAGATGGAGTTCTCTGCACAGAGAGTGGGTAGAAAAGGTCAGTCTGTATCAGACATCTAGATCTTCCTCACAGGCAACTGGGTATATTGGTCCTGTCTTTCTTTACTTAATATTAGCCTACCTTACTACAAGAAGCCACTGCTCTGGGCCCTTGTCACTGCAGAGGGCACGTGAGGTACCCATTTTCAAATCTTTGTTCCATTGTCTGAACATTGTCACTTGCTGGATTGGCCCTGTCACCCTTATCTGCTTCCACATTCCATTTCTCTCAGCTTTTTGATCTTTTTCTTTGGTTGATAG
Seq C2 exon
AAATCGAGATAAATATGTTGGACGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTCCCTTCCCGGGGTCAAGCTTCACCGGGCAGTGTTGGGACACATCCGCTGTCTTCTGGAGGGCACCACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566:ENSRNOT00000056234:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTATCCATAGGAAGCG
R:
GTGGTGCCCTCCAGAAGACAG
Band lengths:
246-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]