RnoEX0065297 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64819932-64820778:-
Coord C1 exon
chr10:64820653-64820778
Coord A exon
chr10:64820201-64820259
Coord C2 exon
chr10:64819932-64820075
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTACTTAATATTAGCCT
3' ss Score
4.3
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAGCGGAG
Seq A exon
CCTACCTTACTACAAGAAGCCACTGCTCTGGGCCCTTGTCACTGCAGAGGGCACGTGAG
Seq C2 exon
AAATCGAGATAAATATGTTGGACGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTCCCTTCCCGGGGTCAAGCTTCACCGGGCAGTGTTGGGACACATCCGCTGTCTTCTGGAGGGCACCACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.550 C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000056234fB10593
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAACTCTACTGCCATGG
R:
CCGGGAAGGGAAAAGCTGATG
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]