MmuINT0118695 @ mm10
Intron Retention
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78013171-78015630:+
Coord C1 exon
chr11:78013171-78013291
Coord A exon
chr11:78013292-78015497
Coord C2 exon
chr11:78015498-78015630
Length
2206 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CACATCTCGTTCCTCTGCAGGAG
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCTAGCAAACGGAGAAGAAAGGAAGAAACCACAGGGAAGAATGTAAAAAGGACACAGCATGAGTTAGACCATAATGGTCTTGTTCCCTTGCCGGTCAAAGTCTGCTTCACATGTAACAG
Seq A exon
GTATTTTTTTTCCTCTGTCACCCCTTGTAAGTCCTGTGTGTTAATTAAATGTGGACAGCTTATATTCTAATGGTATTAGCACACAGAACTAGTTGACTGGCCACTTCTTGAATATGTCAATAACAAATTACCTGTGGAGTCAAAGAATTGAGCCAGATATATAATACATTCCTATAATCTCGGCACTTAAGATATTGAGGTGGTTTGGGGAGTTCAAGGCTAGCCTAGGCTCACAAGGCTTCCCCCTTCCTTGAGGGATTCTCAATTGATGGGGAAGTAGTGCCGTTTAACTTAATGGTATCACCACTGAAGAGTCCATGTTCATTATGTAACCCCCTACCCTGATTTAAACCCAGTGGGTCAGAACTCGTTGACATGGACCACAGGGTAAAGGCTCTTGTATCATCACAACCTGAACAGAAGGACAAAACCAACTTTGGCAAGTTCTTTTCTAACTTATACATGGGAGTTGTGGCATATGCACACACATACAAACACATTCACTAAATAAATGTAAAAAAAAAAAAATTGTAGGATTAAACTCAATCCCACACCCATAAAAGACATGAAACTCACGGGGGCTTGTTGGGGGAAGGGAAGGGCTAAGAGGGTAACAAGAGGTGAACATGACCAAAATTTATTATGAAACTGTGGAACACTAAACCATAAAAAGAAGTTGGGTTTGGTGGCTCACACCTTTGATCTGAAAGGCAGGCAGATTCCTATGAGTTCAAGGCCAGCCTGGTCTACACAGTGAGTTTCAGGCCAGCCAAAGCTACATCATGAGACCATCTCAAAAAGGAAAAAAAAAAAAAAAAGAAAGCCACAGATCCCAGTACAGTACATTGATGGTGATTGCTGTAAGTTAGAGTTAGACTTAAACTGGAGGGCGAGAGGCTGATGAGATGGTCAGTGGGTTAAGGTGCTTGCCGCAAAGCCTTGACCTTGGTTTTAATCCAGAGGGCCCATGTGGTGGAAGAAGACTCCATCCCTAAATGAACACATGGCACATGTACTTTTCCTCCTTCCCAATACACACACAAAAGGTTTCTGGCTTTTTTTTTTTTTAATGAGGTACTTAGCAAAATGTTAAACATAAATTTTAAAGTGTTATAGGTATCTGTCCATTCCATTGACTACCTACAAGTAAGTTTGTATAAGTTTGTTATACACAGCTGCCCTAGGACACTAGTTTCCTTCAGATAGGCTCACCTCAGTTATAGGAGCCAGATGTTTCAATGCCTGAAACTGGAATTGTTGGCTTGAGTATATCAGGAAAACTGTACTATGGTTGGAGCAGCCTAGCAGGAGAAGATGCTTAGTTGGCATCACAGAAACCCAGGATGGTGGTACAGACAGCTATCCCAGCACTCAGGCGGAGGATGCAGGAGGGGCAGGCATTCAGAGTCATTCTTAGGGATATAGTAAGTTGAGGTTACATGAGTTGGCTTCACAACCATCGCCTCAACCAAAAAAAAAAAGTATTCGCTAGGAAAGCTATGGAAAACTAAATGGCATATTAGAATGAGAAGCTCTGAGCTCTGGCACTAGTACAGTTTTGGGAGCACTGGTGTTTGCTGACAAGCTCTCTTTGGAGTGTTCTCAGAGGTGCACACAACATTCCTTGCCTCCATCTCCACTTATCAGCACTGGCTTCTTTTTATACAGAAGGGAAGTTGTTTGTTCTGTAGTTACAACTCCAGAAAGACTGCTCATGCATTATTCTTTTCACATTTGTTTGTATGACAGACGATACACAATTGCCACAACATAAGTATACAGATCAGAGGACAACTTGAACAAGTTGGTTCTCCCTTTATCATGGGTCTGACGAATTGAACTCAGCAGGCAGGCTTGTTGGGAGGTGCCTCTTGTTGATTTATGTATTTATTTTTAAGTGAGAATTCCTTAAAGAACAGGGGCAGAGAGCGGAGCTGAGTACTAAGCATTGGTCATTTTTGCTCTAACAGCTACTTTAGCCGTACTCCAAACATTTAGATTCACAAGATACATTCTTCGTATAAGATAAAATAATGAAGAACCTGGTTTTCATCTTCCTTGCTGACTGAGTGTGACAGAGCCTAGAGGGAGGGAAGATGGACAGGACAGGCTGTGAGGACTGACTGAGGAGGAAAGGATCTTTTTAGAGTAGAATGGTCTTGAATTTTGCCCCAGAAATCACCCATCACATCTCGTTCCTCTGCAG
Seq C2 exon
GAGTTGTCGAGTGGCCCCCCTCATCCAGTGTGACTATTGCCCGCTTCTGTTTCACATGGACTGCCTCGAGCCCCCGCTCACTGCCATGCCCCTGGGCAGATGGATGTGTCCGAATCACATCGAACATGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791:ENSMUST00000049167:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(25.6=24.4),PF0062824=PHD=PU(13.0=14.6)
A:
NA
C2:
PF0013017=C1_1=PD(71.8=62.2),PF0062824=PHD=PD(84.8=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types