RnoINT0110335 @ rn6
Intron Retention
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64829256-64831635:-
Coord C1 exon
chr10:64831515-64831635
Coord A exon
chr10:64829389-64831514
Coord C2 exon
chr10:64829256-64829388
Length
2126 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CACATCTCGTTCCTCCGCAGGAG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GTTCTAGCAAACGGAGAAGAAAGGAGGAAACCACAGGGAAGAATGTAAAAAGGACACAGCATGAGTTAGATCATAATGGTCTCGTTCCCTTGCCAGTCAAAGTCTGCTTCACGTGTAACAG
Seq A exon
GTATTTTTTTTTTTCTGTCACCCCTTGTAAGTCCTGTGTGTTAGTTAAATGCGGACAGCTTATATTCGATGGTATAAGCATGCAGAATTAGTTGACTGACCACTTCCTTGAATACGTCAGTAACAAATTACCTGCAGAGTCCAAGTACAGAGCCAAGTATATAATGCATGCCTATAATCTCGGCACTTAGGAAGTTGAGGTGGTTTTGGAAGTTCAAGGCTAGCCTAGACTAACAAGGTCCTACCCTTCCTTGAGGGATTCTTAGTTGATGGGGAGGCAGTGCCATTTTATTTAATGGTATTGCCACTGAAGAGCCCATATTCAATAGTAATCCCCTACCCAGATCATGTAAGTAACCCTCACTAAAGCCAGTGGGTCAACACTGAAGAGATGGACGCTGAGTAACAACACAACCTAAGCAGACGGACAAGACCAACTTTGGCAAGTTATTTTCTAACTTCTGCATCGGAGTTGTGGCACACACACACACAAACACACTCACTAAATGTAAGAAAGAAATATAGGTTTAAATTCAATGCCACACCCATAAAAGACATGAAACTCACAGGGGCTTGTTGATAGGGAGGGAGGCTAAGAGGATAACGGGAAGCGAACATTACAGATTTACTGTACAACTGTCAAAACACAAAATCATAAGAAGCTGGGTGTAGTGGCGCACACCTTTGATCTTAAAGGCAGGCAGATTACTATGAGTTCTGGGCCAACCTGATCTACACAGTAAATTTCAGGCTAGCCAAAGGTACATAATGAGACCATCTCAAAAAGAAAGAAAAACCACAGAAGTACTGGTGGCTTACATTGACATTCATTGCTAGACTTAAACTGCTCAGTGGGTTCAGGTGCTTGCTGCAGAGCCTTGAACTTGACTTTAACCCTGAGAGCCCATGTGGAAGAAGACTCCATCCCTAAATAAACACATGGCACATGTGCTTTTCCTCCTTCCCAATACACACAAAAGGGTTGTGCCTTTTTTTTTAATTAGGTATTTGTTAAAGATAATTTTTAAAGTGTTATGGGTATCTATCTGTACCCTTGACTACCCAGCTGCCCTAGGACACTAGTTTCCTTCAGGTAGGCTCTCCTCAGTTATAGGAGCCAGATGTTTCAATGCCTGAAACTGGACTTTTGTTGGCTTGAGTATATCAGAAAAACCGTATTATGGTTGGAGTAGACTAGCAGGAGAAAACGCTTACCTTGCACAGTTGGATCCCCAGCATCACGTAAACCCAGGATGGTGGTACAGACGGTTATCCCAGCACTCAGGCAGAAAATGCAGGAGGAACAAGGATTCAGAATCATTCTCTGATGTACAGTGAGTTGAGGCTACAAGAGACTATTTCACAACCATCCTCTCAACCAAAAAAAGTATTCACACCGAAAACTACAGAAAACTAAATGGTGGTCCATTAGAACTGTAGAACTTGGCCAGGAAAAGCTTTGGTGCTGTACATTTTGGGGACCACTGGTGTTTGCTTACAGCCTCTCCTCATTTCTTGCCTTCATCTCCACTTATCAGCACTGGTTATCTACCTTTATACTGAAGAGAAGTCGTTTGTTCTATAGTTACAACTCCAGAAAGACTGCTCATACATTATTACTGCATTTGTTTGTGTGAGGGACAATACACAATTACCACAACATATGCTTACAGATCAGAGGACAGCTTGATCAAGTTGGGTCTCCCTTTTATCGTGGGTCTGATGAATTGAACTCAGGCAGGCAGATTTGTCGGGAAGGGCCGCTGACCCAGCCTCTTGTTTATGTATTTGTTTTTAAGTGAGAATTCCTTAAAGAATAGGAAGATCAGAGAGCAGAGCCGAGCGCCAAGCATTGGTCACTGTTGCTCTGACATCGACTTTAGCCATACTCCAAATTAACATTGAGATTCACAAGATGCATTCTTCCTAGAAGATCAAATAATGCCTGAAGAACCTGGTTTTCGTCTTCCTTACGGACTGGGTTTGACAGAACCCTAGAGGGAGGGAAGTATGGACAGGACAGAGCTATGAAGAGTGAGGAAGAAAGGATCTTTTCAGAGTAGAGTGGTCTTGAATTTTTTTCCACATTGCCCCAGAAATCACCCATCACATCTCGTTCCTCCGCAG
Seq C2 exon
GAGTTGTCGAGTGGCCCCCCTCATCCAGTGTGACTATTGCCCGCTTCTGTTTCACATGGACTGCCTCGAGCCCCCGCTCACTGCCATGCCCCTGGGCAGATGGATGTGTCCGAATCACATCGAACATGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566:ENSRNOT00000056234:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(25.6=24.4),PF0062824=PHD=PU(13.0=14.6)
A:
NA
C2:
PF0013017=C1_1=PD(71.8=62.2),PF0062824=PHD=PD(84.8=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]