MmuINT0120084 @ mm9
Intron Retention
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20794406-20795708:+
Coord C1 exon
chr5:20794406-20794467
Coord A exon
chr5:20794468-20795606
Coord C2 exon
chr5:20795607-20795708
Length
1139 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATC
5' ss Score
3.57
3' ss Seq
TGTCTTTCAACCTCACTTAGCTT
3' ss Score
4.75
Exon sequences
Seq C1 exon
ATCTGGACAATTCAGAGAAAAATGAACAACTGAAATTCAGCATCATTGTCCGGCTCCCTCCG
Seq A exon
GTAATCCTGAAATTCATTTCCTCTTAAGCCCTGGTCCACTCTTCTTCATTTATCGCCTGTGAGAAGAGTTTCCTCCCTTTGGCTGAAGTCAGTTCACTTCCCATCCATCTCCAGCCTTCTGTTGGCTGTCCCTCACAGGGCCTACCCCGTGTCCTCTCTGGCGCTGAGCTCTAGCACAGTGTATGCTGATAGTTTATGCATCTCATTCCCTAGGAAAGCACACTCCTGTTTATATCAGAGTCTGAGTTGGAGGGAAAAGGGAAACGTGTGCCTCTGGCATTTAAACTGATAAGGGATTTAGATACAAGTGAGGCCAGAAGGTTCTAGAACTGTATTTCCTCTTCTTATTGCATAGCTGAGCATAGGAAAACATTTCCAGGTCAAAAGAAGAACAAAAACCACAAGAGAAAAGGTTATAAGCCACTCCTTGCTCTTTTGTGGGAATATTAGCTCTTGGAGTTGGAAACATCATGAAAACGTGAAATTCCACAGCAAGGTCTTCCAAACCTCGGACTTTGCAAACTTCCTGACCCAAGAGCCTGGCCAGCCCTGCACACTGTTTACATCTGTGAGCACCGGGACCTTTGGCCCTGGCCATCCTCCCCAAAAGGATGTCCCTTCTGGACCTGGTGGTCTTGCCTTATAGTGGTTCAGTCACAGGCTTCCTGAGTACAAAGCACCCACCTTTCCCAGGCTGTCTCCCCTAGGAAAAGAGTTGACATTTAGTTTGGTCTACAAATTTGACTATTCTTTTGTCCTGTATGTTGGGGTATTTAAAGTTTCTGGACCAGACAGAAGAGAAATCACAAACACACATACCATCTTTAGTTTCCAGTCAAAGTGTTATCTGGGTTGGTATGCTCATCTTCAGCTTTGAAGGATCTCAGGGAGAAAGGAATTTGGCAGCATTGATGTAAAAGTTGTTTTCTTCATGGTAGCACTTGAGGGAGTATTTATGAACACTTCAGAAGCATATTTCATGAACATGGCCTCTCTCCAAGGGTCAAAAATCACAAATATTCTGCATTTTACAATAGCTAGCCACTTGGGAATCACAGTTTGAAGTTAAGAGTAGGTATGTGGTCTGTCGATGCACTGTGACCTATACTCTCCTCTGTGTGTCTTTCAACCTCACTTAG
Seq C2 exon
CTTATTGGCCAGAAGGTCTGCCGGCTTTGGGACCACCCCATGAGTTCCAATATCATTTCACGGAACCATGTGGCCCGGCTGCTGAAAAACTACAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-Pion:NM_175437:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1),PF056127=DUF781=FE(22.5=100)
A:
NA
C2:
PF056127=DUF781=FE(37.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: