RnoINT0068003 @ rn6
Intron Retention
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10424713-10426307:-
Coord C1 exon
chr4:10426246-10426307
Coord A exon
chr4:10424813-10426245
Coord C2 exon
chr4:10424713-10424812
Length
1433 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATC
5' ss Score
3.57
3' ss Seq
GGCAGTGTTTTCCCTTTTAGCCT
3' ss Score
7.17
Exon sequences
Seq C1 exon
ATCTGGATAATTCAGAGAAAAATGAAAAACTGAAATTTAGCATCATTGTCCGGCTTCCTCCG
Seq A exon
GTAATCCTGAAATTCATTTCCTCTTAAGCTTTAGTCCGCCTTCTTTCATTTGTTGCATGTAAGAAGACAGTTTTTCCTGCTTTGGCTGAAGTCTGTTCACTTTCCATCCAGCCCTACCCTTCTGTTCCTCACAGGGCCGACCCCGTGTGCTTCTCTGGTGTTGCGCTGACACAGCGTATGCTGACACAGCGTATGCTGACACAGTGTATGCACAGAGTTCATCCATTTCATTCCCTAGGAGACCACACTATATTTACGTCAGAGTCTGGGTAGGAGGCAGAAGGGAAACATGTGCCTCTGACATTTAAACTGATAAGGGATTTCAATACAGGTGAGGTCAGAAGGTTCTAGAACTGCATTTCCTCCTCCTATTGCATAGCTGAGCATAGGAAAACATTTCCAGGTTAAAAGAAGAACAAAAATCAGGAAAGAAACAGTTATGAAGCCACTCCTTGCTCTTTTGTGGGGATATTAGCTCTTGGAGTCAGAAACATCATGAAAACATCAAATTCCACAGCAAGGTCTTTCAAACCTCTGACTTTGCAAACTTCCTGACCCAAGAGCCTGGCCAGCCCTGTGTGCTGTTTATATACTGTGAGCACCAGGACCTTTGGCCCTGGCCATCCTCCCCAAAAGGATGTCCCCTTTGGACCTGGTGGTCTTGCCTCACGGTGTTTCAGTCGCAGGCTTCCTGAGAACAAAGCACCCACGGTTCCCAGGCTCTGTCTCCCCGAGGAACAGAGCTGACATCTAGTTTGGCTTCCAAATTTGACTTTTCTTTTGTTCCATATTGTTAGGTTACTTAAAATTTTTAGGCCAAGCAGAAGAGAAATCCCATAAATACCATCTTTAGCCTCCAATCAGTGTTGCGTGGGTCTGATATGCTCCTCTCCAGCTTTGAAGGATCTCAGATTCAACATCTTTCTCGGAAGAAAGGGATTTGGCAGCCTTGCTGTAAAAGTTGTTTTCCTCAAGTAGCAGTTGAGGGAGTGTTTATGAAAACTTCAGAGGCATATTTCACGAGTGTGGCCTCTCTCCAGCAGTCAGGAATCATAAATATTCTGCCTTTTAGAATATTCCCATTAGGGAATAAGTTTGAAGTGAAGAGTAGGTATGTGGTCTGCCAGTGCCCTGTGACCTATACTGCCCTCTGTGTGGTTTTCAACCTCACTCAGCTTATTGGCCAGAAGGTCTGTCGGCTTTGGGACCATCCCATGAGTTCCAACATCATTTCACGGAACCACGTGGCCCAGCTTCTGAAGAACTACAAGAAAGAGGTGAGTCTATGTAGACCCAGATAGTAAGCATTCTCCAGACCCCACCTCCCATCTCAGTGTGCCCAGGTAGACACAGCGATGATTTTTATCATTTTCTTTAAAGCTGGGCATATCTTGGAGAAGCAACTCATATGTAGGCAGTGTTTTCCCTTTTAG
Seq C2 exon
CCTCAGAGCTCTATGATTGACAAGTCATCATTTCCAGTAGAATTTCTTCCTCTGAACTACTTCATTGAAATTCTGATGCACCTGGAGTCCTCCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801:ENSRNOT00000039953:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PD(10.4=57.1),PF056127=DUF781=FE(22.7=100)
A:
NA
C2:
PF056127=DUF781=PD(13.6=35.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]