GgaINT0120690 @ galGal4
Intron Retention
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12532074-12532378:+
Coord C1 exon
chr1:12532074-12532178
Coord A exon
chr1:12532179-12532284
Coord C2 exon
chr1:12532285-12532378
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGAAATGTTTTCACTTGCAGTGT
3' ss Score
9.55
Exon sequences
Seq C1 exon
GCTCTTGGTCTAAAGGCCCGTCAGTTCTGGGATCATCCAGTAAATGCTAATTTCCGTGCACGGAAGTATGTGAAACTTTTGCTTGAGAAGCTGGGGAATAGGCAG
Seq A exon
GTAAGACATTGTTGAGATTCCTGACCTTGCTGTCTGCCATAACACACTGAAGGCAACACTGAAACATGGTACCATGCAAACTAATCTGAAATGTTTTCACTTGCAG
Seq C2 exon
TGTAGCAGGCCTGTCCCTGAGAGACACCCAGTCTGTGTAGAATTTTTGCCTCTTAACTACCTGACTAATGTGCTGGCAGAGATAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGTCTAAAGGCCCGTCA
R:
TGACTCTCTATCTCTGCCAGCA
Band lengths:
195-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]