MmuINT0121644 @ mm9
Intron Retention
Gene
ENSMUSG00000064247 | Plcxd1
Description
phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422]
Coordinates
chr5:110530819-110531350:+
Coord C1 exon
chr5:110530819-110530949
Coord A exon
chr5:110530950-110531194
Coord C2 exon
chr5:110531195-110531350
Length
245 bp
Sequences
Splice sites
5' ss Seq
GGTGTGGGC
5' ss Score
-4.45
3' ss Seq
GTGGCCCGCCCCGCCCCCAGGAC
3' ss Score
8.89
Exon sequences
Seq C1 exon
ACCCTGGACGTGACGCAGCAGCTGGATGCGGGAGTGCGGTACCTGGACCTGCGGATCGCGCATGCGCCGGAGGGCTCTACACGGAACCTATGCTTCGTGCACATGATGTACACGAAGGCGCTGGTGGAGGT
Seq A exon
GTGGGCACCGGGGAGGGAAGGCGGATAGGAAGAGGAGGAAGAGGAATGGGAGGGGGGTTGAGAAATGGGAGCAGGGAGGAAGCGTGGGAGGGGAGGGGGAATGGAAAGGGGCAGGATCGAGAGTCTGAGTGGACACAGGCCCCACCAGGCTCACTTAGCTGTCACGTGACCTGGCCCATGACCAGGCCTGTGATGTGACCCACGAACCGTGACATAACCCATGACGTGGCCCGCCCCGCCCCCAG
Seq C2 exon
GACACCCTCACTGAGATAGCTGAGTGGCTGCAATCACACCCCCGCGAGGTGGTCATCTTGGCTTGCAGGAACTTCGAGGGGATGACTTGTGAGTTGCACGACTATCTCGCGGGCTGCATCGTGAACATTTTTGGAGACATGCTGTGTCCCAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064247-Plcxd1:NR_027665:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(24.3=100)
A:
NA
C2:
PF0038814=PI-PLC-X=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGACGTGACGCAG
R:
ACACAGCATGTCTCCAAAAATGT
Band lengths:
278-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: