GgaINT0116406 @ galGal3
Intron Retention
Gene
ENSGALG00000016721 | Q5ZIV4_CHICK
Description
NA
Coordinates
chr1:134189983-134193803:-
Coord C1 exon
chr1:134193675-134193803
Coord A exon
chr1:134192492-134193674
Coord C2 exon
chr1:134189983-134192491
Length
1183 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GTCTTGACTCTCTCTTATAGGAT
3' ss Score
11.59
Exon sequences
Seq C1 exon
GTGCTAACTGTGACGGAGCAACTTGAGGCCGGAGTTAGATATTTGGATTTTAGGATTGCCCACAAGTCTAGCGATCCATCTACGAATCTGTACTTCGTGCATATGGTATACACAACCGTTATTGTACAG
Seq A exon
GTATTGTCCTTGCCTTTGGAATGGCTATACAAACGGTGCTGCTAATTTTATGTAAGGGCCATCCTAATCTGAAAATGCTTCCCCAAGGTTTTCTGAATAGGTTATTTATTTTCCTAGTGGGAGGACTTCGAACCAGAGCAAGTTGGCAGGGCAGGTTACTGAGCTAGTTTCAGCAGTTGCAATTAAGGTTTCAGCACTGATCATTTTCTTATCCTCAAACTGGAACTGCTGTGCCTTGCTCTGTACCACCTAAGCCCCACCAAGTGCCTTATGTTTCTGGGGTTTATCTTGTGTAGTCCAAGGATGCTATGCAGGGCAGTCATATTTCCCCAGTACAGACAGAAGTTACTAAAAAGAAAGTATTAAGAGCCTACTAAATCACAGACACTTTTTGGTTTGTTTTTTTTGAGGAGTAGTGTTTCACTGAGAAACGCAAGTCTGTGTCCCATTATTAAAGTACTGTCAGGTCCTATTAAGACAGTAATGTGAAGTTGTTCTTTGGCCTGTGCTATCTCACTGTGGGCCAGTTTATGTTGTCTTTGCATTTGCTGAGATTTGCACAGCTGGGCACAGAGGAATGCACAGCCAGCTAAAGCAGCTTTTGTTTGTAGACTGACTGGCTAAGCTTTGGTTTCGTACTCATCGTCTGAACCTTTCATGTCATGATGATTGGCACGTTCAAGTGGATAGTTAGGTGTAGTGCCTGTCTACTCTGCTAATTATGTGTGATCTCCAAGAAGTTGTCATTGCCTGTAACAAATAGGGAAAACAGATCCTGTCATGTTTAAGCAAGCACAGGGTTTTCTTTATTTTCCAGTTTGCCACCAACATCATGTTTGACCTTAAAGAAGGTTGGGAACATGGGTTTACTGATAACCTGGCTGTAAGAAGTAGGAGATTGATGGGTATTACCAAAATCCAAAGCTGTTAAATGTAGAGTTCTGGCCCCACAGCCAGAGCAAATCAGCACAGACCTGCAGAAAGTAGGTTTTTCTGGGGTGCTTCTCTCTGAAACACCTTGTGGGCTGCTGGATGTCCATACTTTGAAAACCTACATTGATTTTCATTACAGGGGTCATGGGTCTACCCAGCCATTAATGGTTCCATTAATGGAAAAGTTTTACTTCCTTTTCTCTGCGTGATTCAGTGTGATTTTCTAAGTTGTCTTGACTCTCTCTTATAG
Seq C2 exon
GATATTCTGTGGGAAGTGTTAAAGTGGTTGGAAACTCATCCTCAGGAAGTTGTTATCCTGGCCTGCAGGAATTTTGATGGATTAACCAAGAAACTTCACTGTCATCTTATTACCTGTATAAAACAGATTTTCCAGTGTAAACTGTGTCCCAGAAATGTAAGTATGAGATCTTTTCTCCGTTTTTTAAAGGATGATGCATTACAGTGTGTTGTGGTTTAACCCAGCAGGTGGCTGAGCACCACACAGTCATTTGCTCACTCCCCCCCTTCCCAGTGGGATGGGGGAGAGAATCTGGAAAAAACAAAAGTAGAACTCATGGGTTGAGATAAAGCTATTTACAAAGATAGAGAAAAGGGAAAGGATTATAATTATGAATATCTATATCTATCTATCTGTATATGAATGTACATAACAAGTGATGCAGAAGCAGTTGCTCACCACCTCCCTGACCAACACCCAGCTGGCTCCCCGAGCAGCAGAAGAGAGAGAGATACCCTCCCATCCCCTCGAAAACTCCTTCCACATGTTGTCATACGGTATAGAACATCTCTTTGGCCAGTTTAAGTCATCTGTCCTAATTCTGTCCCCTCCCACCTCCTTGGGCTCTTCTCTGAGAATGGCTTTGGCTCTGTACAACACTGCTTAGCGGCAACTATCAACATTGGTGAGTTATCAACATTGTTTTTCTCCTAGAACCAAAACATAGCATCATACCAGACAATCTAAAGAACACAGTTCCGTCCCAGCTGAAACTAAGACACAGTGAAGTCTTGGTTCCGAGTTTTATTTGCTGCTTTTCTTGTATTTTTATCCTAGGAAATGTAGCATTTACTGTATCGGGGGTAGGTCTTTACCTAATACATATGAAGAGATAAAGCATAGTATGGAGGAGGGAATTAAATTTGACTGTCATATGTATAGATTTGTGGGCCCATCGTAGGGATACAACTGCTATCTGCTAATCTACCAGATTTCTGTGAATAAGTGTTGCTATAATAAAGTCTGGACTATGGCAAGGGCTTTCAGTCTTAGATGGAGATTACTACCTTCTTCTGTTGACAGAATTCAGAACAGTTCCTTTTCTTCCTTTTCACAGCAGTGATTATAAATTATTTGGTGGTATTTATAGCATCACAACTATATAACTTAGTTTGGAAGTGAACTCTGAAATTCAACCCCACCGGGCAGACCAGACCTATTTCAAAGCTGTGTTGGGCCATATCCTGTCCACTCTTGGATATCTCTGAAGATGGACATTCTATAGCCTTTCTAGGCAGCTTGATCCAGTGTTTGACCACTCTGGCACTAAGCCTATTTTCCATATATCCAATCAGAATTTTTCCTGTGGCACTGTGTATCTGTTGACTTTCATCCTTTTGGCATGCATTTCTGAGGAGCAGCTGGCTCTGTCTTTCTCTACAGTCACCCATCAGGCATTTGCAGACAGTAGTAAGATCTGTCCACAGTCATCTTCAGGCTGAACAGACTCAGCTCTCAGCCTGTATTTGAGTATCCAGCCCCTGCTCACCTTGGTTTCATGCTGCTGGACTCACTTCAGTACATCCGTGTCTTTTTTGTACTGGGAAAGCTCCAGCTGGACACAGTGGATTTGCACGATTCCCCAATCTGTCCCAGTGTGTGGGATTACTCCATCCAGGCTCAGGACACTGCATTTGCCTTTATTGAGCTTCATGAGGTTTCTGCCAGAGGTGCCAGGTGAGGAGGGAGAAGGTAGATCAGTCTGAATCAGGCGCTCTTTGCTACAGCTGCCAACGGGATACAAGTTGGTGCAGAGGTTTCTGTGCATTACCAGTCCACCTGGGAATATGCTGACACCAGCAGCTGCTGTCAGAGAGGGGCCACAATAGTGGCCTTGGCTTTCCTTTCTCCACTTCAGCTGGAGCTGACCTTCCAGACAGCCTAATAAGCTTTCAGTCACCCAAACCTCTAGAAAAGCTTTAATTTTAATAATTGGAAATTATTTGACTGCCACATTTTAGAAGTTGAGATTTTTAGCTTCCTCTTTTGACAAGGTGTGGGAGCTTTCAGCAGTTAAACAATTAACATTTCAAAGATGCATAGGCACAGAAGGTTTTCTCTGGAGATGTGAGGGTGCAGGATAATGATGACCCTGTTTGCGATTTGAATTAATCCTTTGAAGCTGGTGGATCAGTAAGGGCTGAGTATTACCATTTCAAAGCATTTTGTACAGCAGAGTTAAAATAGAACAATTCTCAGCAAAATTAGGGGTTTCTGATAATTCAGGCCTCAACTGAATAACAGGGGACCTGAGAGAAAATGTTTAATTGTTTCCTCAAATATCGTGACTGTGTAAGTCGTGGCTGAGCAGAGCAAGACTGGAGAGGATGACCAAATTTGCTTTCAGATGCATGGCCAGTTCCAAAACAAAAAGAAGTGATTAATTGCAAGAGGGACAAGTTGTTGCTGGTAGGTTGTTGAAGGAAGGTGATGGTCTGAGGTCACGTGACTGAAGAAGAAAAGCAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016721:ENSGALT00000026985:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(32.3=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(38.6=80.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTGCCCACAAGTCTAGC
R:
GGGGGAGTGAGCAAATGACTG
Band lengths:
342-1525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]