HsaINT1027309 @ hg38
Intron Retention
Gene
ENSG00000182378 | PLCXD1
Description
phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148]
Coordinates
chrX:290648-291654:+
Coord C1 exon
chrX:290648-290776
Coord A exon
chrX:290777-291498
Coord C2 exon
chrX:291499-291654
Length
722 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CCCAGCACCCCCCTCCCCAGGAC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GCACTGGACGTCACAGAGCAGCTGGATGCCGGGGTGCGGTACCTGGACCTGCGGATAGCCCACATGCTGGAGGGCTCGGAGAAGAACCTGCACTTTGTCCATATGGTGTACACAACGGCGCTGGTGGAG
Seq A exon
GTGCGGCCGGGCTGAGGTGGGACGCAATGGGGAGAGTGGGAGGCGGCCGGGCACTGGTGCAGGTGCGGCCGGGCTGAGGTGGGAAGCAAGGGGGACAGCGGGAGGCGGCCGGGCACTGGTGCAGGTGCGGCCGGGCTGAGGTGGGAAGCAAGGGGGACAGCGGGAGGCGGCCGGGCGCTGGTGCAGGTGCGGCCGGGCTGAGGTGGGAAGCAAGGGGGACGGCGGGAGGTGGCCAAGCTCCCGTGGGGATGAAACAGCCACATGCAGATGTGGACAGGAAACGCCCGGTCTTTAATGGAAGGGTGACGTCACCTATACACCAGACAGGAGACACTGACCCCGCCAATCCGTTACGGAGATTTCTTTTTTTTTTGCTTTTTTTTTTTGGAGATGGAGTCTTGCTGTGTCGCCCAGGCTGGAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAGGCAATTCTCCTGCCTCAGCCTTCCAAGTAGCTGGGATTACAGACGCCGGACACCACGCCCAGCTAATTTTTGTATTTTTAGTAGATACGGGGTTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTAACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAATTGCTGGGATGACAGGCGTGAGCCGCCACACCCCGCCTTCCCTGTGGTGTTGGAGTCGTGCAGGACTCAGCCCAGCACCCCCCTCCCCAG
Seq C2 exon
GACACACTCACGGAAATCTCGGAGTGGCTGGAGCGGCATCCACGCGAGGTGGTCATCCTGGCCTGCAGAAACTTCGAGGGGCTGAGCGAGGACCTGCACGAGTACCTGGTCGCCTGTATCAAGAACATCTTCGGGGACATGCTGTGTCCTCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182378:ENST00000399012:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(24.9=100)
A:
NA
C2:
PF0038814=PI-PLC-X=PD(29.4=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGACGTCACAGAGCAG
R:
CCCACGAGGACACAGCATG
Band lengths:
284-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains