MmuINT0123186 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24997227-24998759:+
Coord C1 exon
chr2:24997227-24997350
Coord A exon
chr2:24997351-24998621
Coord C2 exon
chr2:24998622-24998759
Length
1271 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTCGTTCCTATCTCCCCCAGATC
3' ss Score
10.55
Exon sequences
Seq C1 exon
GAGAGCCAGGCCATCCCTCTCTTGTCAGTAGCAAGTGTGGCTGGACGAGCCAAGAGACAGATGTCATATGGTCCAGAGGAGCAGCTTGAGAGGTCCCTACGGCCCTCGGAGTTCAGCAGCTCAG
Seq A exon
GTACTGCTCAGTTCCGAGCCTTCTCACTCCAAGGTCCAGGTCTCCTCACTTGTTCCTAGGGCTTATTACGTGGCCCCAGGTTTTTCTGACCTGAGGCTTCCTCACAGGCTCCTCCCATGGTTACAATTCTTACCTACCCTTAGTTCCCTTTATATATGCCCAGATTTCTTGGTCTAGGATTTTCTTATCCGTTCCTAGCCCCCTGAAGCTTCCCTCAGTCAACCTCCCATACCCTGAGCCATGTTGCACGTGTCCAAGAATCTCACCTCTGTCTTTTGGTACTTCTCAGCAAGTGGTTTGTTCCACAGTATGCTGTTCAGGAGAGCAAGTTCTCAATTTTATCTTCTGATCCACATTGCACCACTCCTAGTTCTTAAGAGCAAGGGGGATGAATTGCCCAGGCATACTTAAGCAACATATATCGCCTACGCTAGATTATTATCACAAAGCTAGTTTGAAAGTAGATATACCTTCAGTGTCTTAATAGTCCATAATAGTCTATGGATTCCAGGTGACTAAAAACAGTTTATGAGGTGAAGTGAAGCAACCTACGGTATGAGGTAGACTGCAACTGTCCATTGGGTCCTGTCTAAGACAAGGCTTTGGGCTTGAGTGACCTTGAAACACATCCCTGGTTGATCTGGTTTTCCCCAGAAATGTACTTTAAAATAGATGTCATTTAAATCTATTTCCTGAGTAGTGCTTTTCTCTCTGAAATTTTGGTCAGCTTAAGGGATGGAACCTCGAGTCTTGTCCTCTTGAAGACAGTTGGTTGAGGGCAGCTCTCCAGTGTTGTCTTCACAGAGATTGGAGTGAGGAGGTCTGTAGATCTCTTTGGAAGCAGACAGTAGCACACAGTGTCCAATGTGGTAGGCTAGGCCGGGGTGCTATGAAGCTCAGATGGAACATTCAAACCAAGTTTTGTCACACATGTGCTAATGGTCATCTCTACAGAGGAAGGCCATGGAAAAGGGGGCAACTGGCAGGTTCCTCTGCTTCAGAACATATGGGTGATTGGAGGGGTAGTCAGTTCAGGAGTCCCATAGAGAACAATGGCCAAGAGGGAGGCAAGGTTGGAGGGCCAGCCTGAGGCTAACATTCTTTGGTTACTCCCCTGGCAAGTGCTAATAGTAAGATTGCTTGAAGTCCCTGTATGAGGGTAAGTTATCTGCAGGTTCACAGGGTACTTGGCCTTGGTCATATGCTGTTTGTGGGGACTCTGTTCTTTGGAACCAGACAGAGCTAGAGTAACTCGTTCCTATCTCCCCCAG
Seq C2 exon
ATCATGGGAGCAGCTGTGTGACAGTCTCTGGGCCTCTGCTGAAGAGGAGCTGCTCAGTGCCTCTGCCTTCTAACCATGGGGAGGTGGATGAGCTCAGACAGTCCCAGGGAAGTGGCTCTAACACTTCTGCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.402 A=NA C2=0.495
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCAGGCCATCCCTC
R:
CTTGGAAGGCAGAAGTGTTAGAGC
Band lengths:
262-1533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types