MmuINT0127126 @ mm9
Intron Retention
Gene
ENSMUSG00000023007 | Prpf40b
Description
PRP40 pre-mRNA processing factor 40 homolog B (yeast) [Source:MGI Symbol;Acc:MGI:1925583]
Coordinates
chr15:99125840-99133794:+
Coord C1 exon
chr15:99125840-99125859
Coord A exon
chr15:99125860-99133713
Coord C2 exon
chr15:99133714-99133794
Length
7854 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
ACTTTTCTCTCCCTCAACAGTCG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GAGGAAAAGAAGCCCTGTAG
Seq A exon
GTAGGTGGGGGCGGGGAGTGAGGGTAGAAGGGGCGGGGAGGCCATTATGGTGCATGGCGGGGGGCGGGGGGGCGGGTGCGACCGGGGGCTGAGGGGACGGAGAGCCTAGGCGCTGTGTGAGGAGGAGGAAGGGATGAAGTGAACGGTGGGTCTGTGGAGAAAGGTCGGGGGCGAAGGGAGGGCAGGCGATGGAAACCAGTTGCCAATCCTAGGCTATTTGGCGTGGCCCGTGCCCCTCCCCCAGACCCAGGCTTGTGCCTTTTGGAAGCCCCAGGTGCCCCTTTGGACCTTAGGGGACACCCTTCCTTACCCATCCGTTCTCAAAACCTGTCTCCCGAGGTTAGGAGGGACTTCTGAGGAAAGAGATGCTCCTGGTTTCCACCTCAGAACCGGAGTAGTCCAAGAAACGGAGGAGCAGAGGCCCCTGGGTCCCAACCCTGGCTCTGCCTTCAGACAGACTGTGGTAACTCTGTGTGACCTTGGGCAAGTCACTACCTTTCTCTGGGCCTTGAATTTCCCATTGACTTTTAAAAAGGAAAATGGGCAGTATGATAAACGGACTCTCCATCCGTTGCAGAAGGGGGCGGGATTTGAGGAGGGAATTCAGGCGAAGGGGTTCTAGGATGCGTCAAGCAGGAGGATGTTGGAGTGGAGACCTTCAGCTTGACTGGGGAAAATTTCTCGGGATTTACGGATAAGAGATTTAAAGCTTGCAAGGCTGGGTCCTGGCAGGCCTGGGCCTTGGGAATCCCGTTGGAGAAATGGGAGAACTCTATAAATAGAGGAAGTTGAACCCTGGAAGTTCAAAAACGATGAGAACCAGAAGTAACAACATTCTGTTTCTTCGGGAGAGTGAAGAGGTGATGGAGGATCAGAAGCAAAATGTTGTATTCTAGAAAGATCTCTAGGCTCTTTGTGGGGAGCAGAAGAAATGCTAGGGCTTACACACCAGAGTAGAGGCTAGGAAGTAGGTGGGGGAGGGGCTGGACCTATTTGGGCTCTGCAGGTCAGTGGAGACAACAGGGTGCTAGAGCTCAGCTGTTCTTTGCAGCGCTCTGCATTGAACCTAGGGCCTTGTTAATGCCGGCAAGAACTGTAGTGCTGAACTACTCTGCCAACCCCGTTTCTTTTTGATGATGGCTGCCTCTCTTTGAGAAATATGCCTCTTAGCCTTCATTTTCTTACAGTTCCTTTGGTGAATAAGTCAGTCCAGGCCTACCTAGGATCACCTGGTTGTCTCAGAATCTCAGGATTGGGATTAAAAAAAATGAGGCTAAGAAATGTCATCTGTGCCATCCTTCTTTCTGGGAGGCAGCTTTATGGGGTCGGACTGCTTGGATTCCAAACCTGCCTCCGCCGTTTAATCTCTGAGAACTGTAGCCACGAAGTAACCTGTTAGAACCCCAGCTTCTCCATGAAATGGGGATACTTTCTCAGAAGGTTGTGAGGATTAAATGGACATGTGGTGTGACTCTGGCTCATAATATGCACCCAGCAAACATTACTGTTAGCCGTGATCTCTGTTCTCTTCCCTGTCTCTCTATTTTTGTCTTTTTCCCTGTTCTTCTGAGTGCTCAGTTCTGAGCTACCCCTTAGATCTGAAGGCTGAGAATTGATTACATCTTGTATCAGGATGCTTCCATTGGTCTCCCTGAATATATGATGACTAGATGGCCAATAGTCTCAGTATTGACTCTCCCCTGCCCTACAATGTGTGTTCTGTTCCGGGGAAGACTGACAAATCTGCTTGTCTTTAGCTTTCTTTCTACTGTCCTTTTGCACTGGTCACTTCAGAGTCCACTCAGAAGTGTTACCGTCCCAAAGTTGTATTGGTATTGCAGCAGGTGAGAGGAGCAGAAAAGAAAGGACAGCACAGGGGGAGGGAGGGAAGACTCTAAAAGGTCCATGGTCATTTCCATTCATCCCATCCCTCTGTCTTCCCTGGGTAACTGAGTAAAATGGGCCAGGGTTTGAATTCTGTCCAGAAGTCTCCATACAGTTAGCTTTCTATCATGTAACTTTTCCCATATGAGTATTTGATACCTGCTGCCTTCCACCAAGGTAAAGGATCTCTATTTTACATGTTTCTATTACCGATTATACTCAAGAGAATTTACACAAACAAATGAGTGCAAACAGTATTTTAGGTAGTATCCAAAAATCCACCAAGGTTAGGGATGAGATGGTGTCATCAAAGCACTTCAGGTGGAGGGCCACCCTGTCTAGACAGTTGGGGAGTTTGAGAAAGAGAAAACCTAGGCTGTCGAGATGGCTTAGTGGCTTAAGTGCTTGCTGCAATGGCAGAAGGATTGGAGTTCAGATCCCCAGAACATACAAAATGCTCAGCTCCTTGTAATTCTAGCCTTTAGTGCAGAGACTGGATCACCAGAGTATGACAGCTAGTGAGACTGGCTTTATCAGTGAGCTCCGAGTTTGGTTGGGAGACCTGGCTCTCCCCAAGGAATAGGGTAAAAGATTGATGAAGGATAAAGGATAATTCCTAACATCAGCTTTGGGCCTCTGCATGCTCATGTGCCTCCCATGTCCTCAGACATTATGAAATGGGGAAAGAAAGAAAGCTCACTTCCAAAATGTAGCACACTGGATTGGAAAGGCAGGCACTCTCAGAAGCCCAGTAAACATTCACAGAGGTACAAGCGACTGCCAAGTGGTGTGCTTGGTCCTAAGAGGACAGAGTGTGTGGGTGTGCGGGTGTGGGTGCTCGGGTGTGCGGTAATGTGAAAGTAAAACAGAGTGAACTTTGGATCATCTTGAATAAAATGAGAGAAATCTAACAATTCCTGTACAGAAAGTTAACTAGGAAGCCCTGGCCTCAGGATGGGCCAGATGTGGAACTGCCTGTAGCGAAAGGCTTTGGATGGTAGATGAAGAGAAAAAAGTATTTATTTATTTATTATTATTATTATTTTTTTAGATAGTGTTTCCTCCGTGTAGTCCTGGCTCTCTTGTAACTCACTCTAGAATCTGTGGTCTTGAACTCAGAAATTCACCTGCTTCTGCCTCCCAAGTTCTGGGACTAAAGGTGTATGCCACCATGCCCAATTTACTAATTTATATATTTATTTTGAGATAGGGTCTCCCGCTGTAGCTTTGGCTGTCATGGAACTTGATTCAAGATAGCCTTGAATTTTCGGAGATCTATCTGCCTTTGCCTCCAAACTTAAAGGCATATGCCAAATTAAGAACACCTGACTCTAAGTCGAGGAATTTTATAGGGCAGGCAGTAGGCACCACTGTTTATTCTTAAGATGAGGTTTGAATCTTGATGATTTAGTCACTTTCAGGGAAGGTTGGTATGAAAACACTGCTTTCTGTGGCAGGCACTGTGCTTCTAGGGAGGACAGATGGGATTTAGTTGGCTCATCTGAAGCCAGCTGTGGGACTGACACACCATTTACAATTACTCTGTCTGACCTTTCTCACATGCTAAGAGAGGAGTGCCGATGTGTGAAGTGGCATTCCTTTAAGTCCAGCACTTGGAGATGGAGGCAAGAAGATCAGGAGTTCAGGACCAGTCAGTCCAAGCCACCCAAGCCACTGTCTCAACCAACCTTGGCACATGGCTATAATCCTAGCACTTGGGAGGCTGAGGGAAGAGGGTTGTTTGGTTGTAGGTTTGAGGCTAGAGTTAGAGTGGGGTATAGAGCGAGCGAGTCCTAGCCAGCCTTACTATAAAGTGATAACCTGTCTCATAGAAGGTTTCGGGAACATTTGGGGGATATTCAGAGTCTCCTCCAGCTCTAAATTGTGTTTTCTTTATAAGGAGGCCTTATCAGAGGCCACCGAGTTTGGCAGGACTTGCCAAAACCAAGTCAATGACCTGCCCCACTTTAATTTTTCTATAATGTCTATTACTCATTTGGATGACAGAGCATGTGCTACAGTGCATGTGTGGGGGGAAAACAGGGGAAAGTTGTGAATCAGTTCTGTTTCTGCTGTGTGGGTCCTAGGAGTCAAATGCAGGTCCTCAGATTTGAAGGCAAGTTCCTTAATCCACTCAGTAGCTCATTTACTGCTTCATTTGTGAGGCAGAGTCTCTGCAGCCCAGACTGACCTGGAACTTACTACACAGCCCACAGTGACCCAAGCTCCTCATACTCCTATCTCCATCTTCCCAGGGCTAGGATTGCAGTGTTGAGCCGCTGTGCTGAGTTACCTCTGCCCTTAAGACTTTACATTTTAGTGGAGTTGCTCTAAATTCGTTAAATCCAAGATGTAAGTGAGGATCCATGTTTTTGTTTGTTTTTCTAGAAATACTTTTTCTAAATAAATTATTTATTATATATACAATATTCTGTCTGCATTCCAGAAGAGGGCATCAGATTCCAGTATAGATGTTTGTGAGCTACCAAGTAGTTGCTGGGAATTGAGCTCAGGACCTCTGGAAGAAAAGCCAGTGCTCTTAACCTCTGAGCAATCTCTTCAGCCTGTGAATCCATGTTTAATAGAGTATATGTTTTAATGCCATGAGATGGTATGTTTGGAATTATACTAGTGACTGTAAACTTGTGATGGGTGACTCCTAGAAGGAAGGTGTGTGGTGTTGAACATATAAAGGAGACTCTGGCTAGTGCAGTGGGTTGCTGAAGGTTTTCATTGGAAATATTTGTTGGTTGTGAAGTGTGTATAGGACATAGGAGAGGTGCCTGATGCACAGTTGAATGCCTGAGCTGGGAGAAGTGAGTGTGGCTGGAGCACAGAGATGGGTATGGAAGAGACCGGCAAGGTCAGTGGCCTCAGAGACCTGGGTAGAGTCTTGGTGTTCACTCAGAACAGTGGGAAACCAATGGAGAATTCTATGCAGGTGCTTATGGGTCTGATGTGTATTTTGGAGGGCATTGTGGGTACAGATAGAAGTGGATATGAGGATAACAGTTTGGGAGGCCACATTGTAGATCAGATGGGAAAAGTGGTTTGGGCAAGAAGTGTGAGAAGAAATGGAAAGAGCACCTAGATGGAAGAACTCTTTTGGAGGTTAAACTGAGAGCTGGGTGACATATCAAGAAGGCTCTAGAGAGTGTCTTCAACAGATGACTACATAACATGGTGGTGCTGGGCCTGATAAGACTGAAGGATGATTACGGCGTAGGTTTAAGAGGCTGGATAAATGGTTCAGTGGTTAAGAGCACTGGCTGCTTCTTCCAGAGGACCCTGGTTTGATTCCCAGCACCCACGTGGCAGCTTACATATATCTGTAACTCCATTTTTAGGGCTTCTGACACCTTCACATGTAGGCAAAACACCAATGCACATAACATAATAATGTGTGTATACACACACACATTAAAGGCTCTTAAAGCAGCTTAAGGTGAAATAGTAGAACATAAAATTGGTATCTCCTATGCAAGTCATTTCTGACATTCCATACAGATAAACTCTCCAGAGGATAGGAACAGTACACTTAGTTGAAGGTAGACAATAGAGAATTCTAATAGCTTGGCACATAGCTACTTAGGACAAGGAAAAAGATATTTCTAGAGATAAAGGTTACAAAGCAGTTTTAACTGGTCAGGCCTCCTCAGGAGCGGGGTAACTGAGAACAATTGTGAGGCAGCTCCTGTCCGTCCAAACTTCCACCTCTTACTAGAGCTCTTGTGCTGGTCCTCAGCTTCTGCTTAGGGAGAAAAACAGCCCTTTAGCCACATCCTCACCTTTTACAGAGTGTTTGAGCTGGGCTCAGAGGTTAAGAGCACTGACTGATCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAATTACATGGTGGCTCACAGCTATCTGTAATGGGATCCAGTGCCCTCGTGTGTCTGAAGAAGTGTACTCATACCAAAAATAAATAATTTAAGAAAAAAAAATGTGTTTGAGCCAGGCGTGGGCACACCTCGAATCCCAGCCCCTGGGGGGCAGAGGCAGGAGGATCTCTTGAGTTCTAAGCTAATATAGTCTACAGAATAAGTTTCAGGGTAGCCAGGGCTACATAGTGGCACCCTGTCTCAAAAACAAAATCAAACAATATAAGACTGTCTGTCTGTTTGTGTCTACGTCTATGCCCAGAGGCCAGATGAAGTCAACCAGCATTTTATTCATCCCTCACTGCCAAATTTACTAGACATAGGGCCTCTCATTGAACCTGGAGGTAGGCTGGCAGACAGCAAGCCCTAATGATCGCCTTCATAGCACTAGTGTTACAACCATGCACAGTTGTGTGTGTGTGTGTCTGACTGTCTCTGTGTATGTGTGTTTGTATATATTATGCTGGCATCCAAACTCAGGTACTCATGCAGCAAGTGCTCTTACCCACTGAGGCATCTCTTCAGCCACCAAAAGACATTATATATATATTTTTTCCATGTATTTAAGTTTGTCTGCATGTACATCTGTGCATCATGCCTGTGCCTGGTACTCATGGAGGCCTACTGGAGTGTGTCAGATCCCTGGAACTGGGGGTATCCACACATGTGAGCCATCATGTGGGTGCTGGGAAATTGAACCCAGATCCTTGCTCCTGGAAGCAGCTGTCTTGAGTGCTGAGGGATGTCTCCTCCTGCCCCACCCCAGGTATTTTTGAACAGGTAATAAAACCATATAGTTGGCATATTCATAAGGCATAAAATGACATACTGTGGAAAGTCTCTTCCTTCTGTGCCAGGAAGGATCTAGCCTTTGCTGCTGTTGGAAGATGGGTGGTGTTGAGCACTGGGTGGGAGAGCCGCTCTCAAACTCTAGTCCATAAAGTGACAAGAGAGTGTCTTTTGTATCTTATACAATAAAGCTTCGCCCCACCTTGCCTCCCTCAGCTTAGCAGCACATCTTTAGATGTTGGCATCAATCCATATCTTAGTAATGAGTTTCCTCATTCTTATGACTGTGTTCCATTTTATGTTTTCGTCTCATTAGTCTTTACTGATGGATATTTCAGCTTATTCTTATTTCTGTTTATAAATATGTTAAAATAAAGATTTTTCACATCTATTATTTTATACATATATATACAATGATTTGTACATCTATCATTCTGTATATAAATATACAGAAAGAAAGAAAATGACATTTTAGAATTTGAAAGTTTTATAAAGAGATTTGCTTCCTTTGTTTTAAATTCATTCAGTATTTATTGAGTACCTATTATGTGCCAGACCCTGAGGCAGGTACCAGGAATCCAGCTTTCGGCAAGTCATGTGATCCCAGCCTCTGTGGAATGGCATCACTCTCTAGTAAGGCAAAATATCAGAGGAGAAATTGAAGAAAGCTACTTTAAATAGTATCGTGTGGTCAGCCATCAGGGGCAAGATAGAAACACGTGGACTATGCAAGCCTGTGTCCACGTTTAGGGTTTGTAAAGGAAAGGCACCATCAGGTGGGGACGATGGCTTAGGAGTAGACATGGAGAATGTGGATGAGTGAACATGAGTCTAGTTAGGGAAGAAGCTGGTTATAAAGAGACCAGTGCTGTAAAGGAACAGCAGTTTTGGATCAAGTCTTCAACCTAGTAAATTGAACAAGGAAAGATGTCAATCCCTACCTGGCTTGAGAGAGGGGCAAGGAAGCGGGTTGAAGTCATGGCAAGAACCAGATGCCTGTTGCAGCGCCTTCTGTGCCTGTGTTGTGGCATTGGCAAAATGGGAACTCCCAAAGTAAAAATGATATGAAGGACTCCATCATCTGGCTTTCTGGGCTAGCACTAGAGTGTAGAGCTTAGAAGGGCTCAGGCCTGGGATGGGCAGGAAATAAATGGGGCTTGGAAACTCCCTCCTCAACTTGTGTTTCTCTTTCATCTTCACCCCCTCTGCTTCCCTTCTGCAAAAGCCCATCTCTGTGCCCGTCCTGGGTCCTATGACTTTTCTCTCCCTCAACAG
Seq C2 exon
TCGGTTCCCGATTCTGGTCCCCGGCCCCCAGCAGCGCCTGCCCCCTTCCCACCGGGGCCCCCCATGATGCCACCACCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023007-Prpf40b:NM_018786:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.906
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: