MmuINT0127520 @ mm9
Intron Retention
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine, 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110740925-110741800:+
Coord C1 exon
chr9:110740925-110741072
Coord A exon
chr9:110741073-110741525
Coord C2 exon
chr9:110741526-110741800
Length
453 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGTTCCTGAACTCCCTGCAGCAA
3' ss Score
5.73
Exon sequences
Seq C1 exon
TTTGTGGCACACCCTGGTGGCCAGACAACTTGGAGGAGAGCCACCACTGGCCCTGGGAAGCGAGCCTTCAGATAGAAGATAAGCACGTGTGTGGAGGAGCCCTCATTGATCGAAGCTGGGTGGTGTCTGCGGCTCACTGCATCCAGGG
Seq A exon
GTGAGTGTGACCCGTGTACCCAGGACCTAAAGACCATGAGCTACCATGGGCCCAGTCCAGCTCCCTCAGTACTAATAGGAAATCATGCAGGAGGAGGGAACACTGAAGAGTGGGAAGAGCCAGGCTCAAGATCTTACAAGATCCTCTGACTAAGTTGGGATGGGACCCTGAGCAATAGAGACTGTATCCTAAACTGGGCAACAGGAAAACCTACAGGAAAACCCAGACACCACCCCCACACCAGGAGAATATTTATGGGCACTGACACCCACACACCTTGACTCAACGTGACTCTGAATGAGAAGGCTGTTATGTCTTTGACCTTGACCACCCAAGGCTGGATTAACCCAGATTTAGTGGACTTCAGAGACAGGACAGGTCCCGAGAGGAGGCAGGTGCATAGTTGTGCGGGGAAACTGATGTCTACTAGGTGGGTTCCTGAACTCCCTGCAG
Seq C2 exon
CAACAAGGAGTACTCAGTGATGTTGGGTAGCAGCACCCTCCACCCCAACGGCTCCTCCTGGACCCTGAAGATTCCCGTGGGTGACATCATTATTCATCCCAAGTACTGGGGCCGGAACTTCATCAGAAGCGACATTGCCCTTCTCTGCCTTGAAACCCCTGTCACTTTCAACAAGTACGTGCAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTCAAGGTCGGGACGAAGTGCTGGGTGACTGGCTGGGGCCAGGTTAAGCAGCACTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257-Prss45:NM_153172:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(17.5=82.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACTTGGAGGAGAGCCA
R:
TCGTCCCGACCTTGAAGTTGA
Band lengths:
356-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: