HsaINT0133010 @ hg19
Intron Retention
Gene
ENSG00000188086 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:30717]
Coordinates
chr3:46785461-46786245:-
Coord C1 exon
chr3:46786133-46786245
Coord A exon
chr3:46785631-46786132
Coord C2 exon
chr3:46785461-46785630
Length
502 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GGGCTCTCTGTTTCCCACAGCAC
3' ss Score
8.61
Exon sequences
Seq C1 exon
ATGACCCGCCATTGGCCCTGGGAGGTGAGCCTCCGGATGGAAAATGAGCACGTGTGTGGAGGGGCCCTCATTGACCCCAGCTGGGTGGTGACTGCGGCCCACTGCATCCAAGG
Seq A exon
GTGAGTATGGCCCATGTGTGCAGGGCTTGGAGACCTCAAGCTACCATGGGCCCAGCCCAGCTTCCTCATTTCCTGAGTGAAACAGTGTGGGAGGGAGGTAGGGAGTGGGAAGGGCATCTGGGATAAGTGAGAATTGTGCTCGGGGTCTCCTGGGGGCCAGGGACTGAGCTAGGGCGGGAGCCCCTAGCAACAAAGACTGCACCCTAAGCTGAGCAACAGGAAAACCCAGAACACGCCCCCTACCCCATCACGCATGAGAGCATATGTGTACACCAACACTTCCACACCTGCACGCACAACACACAGACCAGGCCACCTTGAATCAATTTGAATGATGAATGAGGAGGCAGTCAGCTCTGAGATCTTCAGTGCCCTCAGGCTGGATTAGGCAGATTGGGTGGAGGCAGGACTCTTGCTAAAGGGGTAGGGCCACGGGGAGGTAGGAGTGTGTTCCTGCTTGGGAGTCTGATACCTACCAGGTGGGGCTCTCTGTTTCCCACAG
Seq C2 exon
CACCAAAGAGTACTCAGTGGTGCTTGGCACCTCCAAGCTGCAGCCCATGAACTTCAGCAGGGCCCTCTGGGTCCCTGTGAGGGACATCATTATGCACCCCAAGTACTGGGGCCGGGCCTTCATCATGGGTGACGTTGCCCTTGTCCACCTTCAAACACCTGTCACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188086-PRSS45:NM_199183:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(34.9=97.4)
A:
NA
C2:
PF0008921=Trypsin=FE(54.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCCCTGGGAGGTGAG
R:
AGGTGACAGGTGTTTGAAGGTG
Band lengths:
270-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)