MmuINT1027548 @ mm10
Intron Retention
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110838421-110839296:+
Coord C1 exon
chr9:110838421-110838568
Coord A exon
chr9:110838569-110839021
Coord C2 exon
chr9:110839022-110839296
Length
453 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGTTCCTGAACTCCCTGCAGCAA
3' ss Score
5.73
Exon sequences
Seq C1 exon
TTTGTGGCACACCCTGGTGGCCAGACAACTTGGAGGAGAGCCACCACTGGCCCTGGGAAGCGAGCCTTCAGATAGAAGATAAGCACGTGTGTGGAGGAGCCCTCATTGATCGAAGCTGGGTGGTGTCTGCGGCTCACTGCATCCAGGG
Seq A exon
GTGAGTGTGACCCGTGTACCCAGGACCTAAAGACCATGAGCTACCATGGGCCCAGTCCAGCTCCCTCAGTACTAATAGGAAATCATGCAGGAGGAGGGAACACTGAAGAGTGGGAAGAGCCAGGCTCAAGATCTTACAAGATCCTCTGACTAAGTTGGGATGGGACCCTGAGCAATAGAGACTGTATCCTAAACTGGGCAACAGGAAAACCTACAGGAAAACCCAGACACCACCCCCACACCAGGAGAATATTTATGGGCACTGACACCCACACACCTTGACTCAACGTGACTCTGAATGAGAAGGCTGTTATGTCTTTGACCTTGACCACCCAAGGCTGGATTAACCCAGATTTAGTGGACTTCAGAGACAGGACAGGTCCCGAGAGGAGGCAGGTGCATAGTTGTGCGGGGAAACTGATGTCTACTAGGTGGGTTCCTGAACTCCCTGCAG
Seq C2 exon
CAACAAGGAGTACTCAGTGATGTTGGGTAGCAGCACCCTCCACCCCAACGGCTCCTCCTGGACCCTGAAGATTCCCGTGGGTGACATCATTATTCATCCCAAGTACTGGGGCCGGAACTTCATCAGAAGCGACATTGCCCTTCTCTGCCTTGAAACCCCTGTCACTTTCAACAAGTACGTGCAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTCAAGGTCGGGACGAAGTGCTGGGTGACTGGCTGGGGCCAGGTTAAGCAGCACTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257:ENSMUST00000146794:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(17.5=82.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACTTGGAGGAGAGCCA
R:
TCGTCCCGACCTTGAAGTTGA
Band lengths:
356-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types