MmuINT0127540 @ mm10
Intron Retention
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64104286-64109686:+
Coord C1 exon
chr14:64104286-64104443
Coord A exon
chr14:64104444-64109460
Coord C2 exon
chr14:64109461-64109686
Length
5017 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
CTCTTCTCCGTTTCTTTGAGGGG
3' ss Score
-0.69
Exon sequences
Seq C1 exon
AGTGCTCATCTAGGCCCAGCCCGCCATCACCTGCCTCAGTGTTGGAGCTCCCCATTGCTGATGTGCAGGCAAGCCGATGAAACGATGGAAGGACAGAAGAACAGGCCTGTTGCTGCCATTGGTCCTCCTGTTGTTTGGGGCATGTAGCTCACTGGCAT
Seq A exon
GTAGGTTTCTGGGGACTCTGTGGCTCAGTCCCTAAGGGTGGTAGAATCACCCGGGAACTAGTTCCAAAGGAAACTTCCCAGGGATAGTGATTCAGTACTTTGGGGCAGGGGTGGGGCAGGATTTAGGGATCTGAGGCAGCTGGTTCTTGACCAAATGATCACTGGTATTCTTATACCACCTGTCCTTTAAAATTGTTGGGGGTTGGGGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAAATTTGTATCTGAGAAATTTGTATTAGAGTTTCCTAGAGTGAATGGCCATACCAGTACACATTTCAGAAAAGGCACCCAGCTATTGGGTCACTGGTGCATAGTGGCTACATCAGGAAGGCTTAAGTCCAGCAGGATCTGCAGAGAGACTCTTCCTTCTTCCACCATGCTGAAAACCTTCTGAATGATCTAATGTCAAGTCTAATATATTACATCACTCAAGCAAGGCAGGGCATCAGTATCCCCTGTGATGGGCTCCTGTTTGAGTACAGAGAACGTATACAGTTTGGGTCAATGAGGTGGTCAACAAATTTCAAGCCTCTGCCACAGGGTGTGCTGTTTTAGAGACTGTATTTATAGTAGAGGAGGACAGAGTTTTCCTCAGTATGGTAGTAGGGATGGGCCTTAAACAAACACAAAAGCTGGGCTGTTGGTTCGGGCCTCTAATCTAGCTACTGAGGACGATGGGTCAAGGGGATCTCAGGTTCAAGCCTAGCCTAGGCTACAGAGTGAGTTCAAGACTAGCCTGGACAACTTAATGAGATTCTGTTCCCAATATAAAAAGTGAAGAGGGTTGAGGATAGCCACTCACAAGTAGGGTACTTTCCTGCAAGCAAGGAACCCTAAAGTCCACACCCAGTATGGCAGCAAAACCCCTGAGTAAACCTTGCTGTCTGTCTTATACAATGGCAGGAAACAGACAAAACAGACTGGTGTTGTTGGAAACCTGGGTGGAGCCGAAGGAATTGGCTGGTCAGGTAGAGTCTTTCTGCACTCATGATATTTGCTTTCCCTGATGGGGAGGCACACTTACTGCAAGCACGGGGTAAAGACTCTGCACACAGAAAGAGCTTAATGCATTGCAGAGGCAGACAGGCCAGCAAGGGGAAAAGGGCTCAGCACAGAGTGGAGAAACCTGCAGGGCCCAGATATGCCAATCTTTGTCAAGATGCCGAGCTCCTTGGTTCTTCTAGACTGGCCAGCCAACAAGTCCCAGGGATGTTGTCTCCATATCACCAGTGAGGGTACCCACTGCTGTGCTCAGAATCTTACCTGGGTTCTGCAGGATCAAACTCAGGCCTTGGCACTTGCATAGCAAGCACTTTACTGAGCTATCTCCTCCTCTCTGTCTGCTCTTGACAGTGATACTGATGGGCTGATTATAGGCTTTAAATCTGGCAAGATAGTATCCATCCATAGGGCAGTGTGGACCACTATCAGTCATTACTCAGCTCTGAAGCCTGCAAGGCTACGCACCGCCATCCATCCCAAGACTTCAGAGGACTCTTTCCATTTGCTCCTGAGAGACATTTCTCGGGGCTGCAGGACTCCACCTCTCACCAGCACCCAGACTTCTGGCAGTTCTGCTAAGCCTAGATGCACCATCACACTGCATTTCCCAGAGGACAGCAATAGTCACTTAAGCACTCATCAGACCCAGCTCTCCAAGGAAGCCTTGCTCCCACCTCCACCCTCAAAAGCCTGCCTTCTGGGTGGATAGGGTCCCAACAATCGATGTTTGACTAGAACCTCTCAGGTTCACCCCAGTGAGCAATTATCCAAACCACATGCTATCGGTCCAATTAAGGCTTTTAAAGGTTGGGCAGGTTGGGCGGTATGTGCTATTACAGAAGCTCTGAGCAGAAAGGGGTAGCTGGGTTTAGAAACAGTTGGACTAGCTGGAAGTCCCTCTCTGCCCCTGCTTTTGCGTGAGCTTGAGTGATCAGCTTCTTTCTTCACCTGTAAAGTGGGACTGCGGATATCCCGGGGAGGGTTTGGGGGATTATTAAGAGTCTGTTGCTCATGCACGCAGCACAGTAGCTGACTCAGGGAAGATCCTCAACAGGTGACATATGGCACTATGTTTCAAAACGAGGGGAGGACTAAAACGAGTCATTTTGCGAACCCAACCTGATTTCGAATGACATCATTTTGTGTACACGTTCAAAGCAGCCATCTCAAATCAACATTTAGTTTCTCCCACCCCAGGCCAACACGCCTGTTTTACTGTACTGTAATTCCTCTTGCTGGAATGCCAACTGTCTCTATCTGCGATTAGATTGCAGGTGCCTTGTAGGATGCTGGGGTCCATCAGGAAGGGAAAATACGCCTCCTTGATATGAGCAGGGGAGACGAGGCAGGGATTCCTGCAATGACACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCCAATCGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAAATGCAATGGCACTTCTGCAGACGGCCCACTCTTCCTCAAATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAAATGCAATGACACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCCAATCGCCCACTCTCCCTCTTCCTTGGCTTCCTGATTTGGGAGCTCAAAGGGTTGATGCCTTTGAATGAAGGCTCCTCAGTCTCTGGCCATCTCTTCCTGACACTGGTGGTTTAAGCAGTTTTACCATTAATACTGCCCTATGGATGGATACTATCTTGCTAGTACATCTACACACTCATCTGGTCCACCCACCTATCCAAACATTTATCCACCTACTCCATCTATCCATCTGTCCAGTTTATACCATCCCCAATACATCCATTTATTCCAGCACTATGTACTGGGCTCCTGCAACGTACTAGTCTCTTGTCTAGGTGGTGTGGCCATAAGAATTAGTCACATATGGCTCCTGCCCGCATGGAGATTAGACTCTAATGAGAGGAGCCGATGTCAAGAGTTTGCAAACATTTGCTGACTATTGCTGGTGTTCTGAAGAGAATATCTCATACAAAAATGATATTGCAATAAAGGTAATTTAAAATTACATCACACACACACACACACTCACACATACACACACACACACACACACACACACACACACACACACACACACACACACACAGAGTACCCCCATAACCCACGCTAGCCTCAAACTCCAGCTTCTCCTGTCTCAATTTTGCCCAGATCAGCAAAACTCACTTTCCGATTGAGGTAAGATGCCAAGGACACACAGGGGCACAGATCAGGGAGGAGAAAGGGGAGGGGCCCTGAGGCAGGAAACTGCAGGTCACTTCTAGGGAATTGAAAACAGGCCTATGATGTTGGGAAAGAAATGGAAAGACAGAGAAGCAATGGTTGGCCGTGGGGGTGGCAATGTTAGGTGGTGACACAGTGATTGGTGATGAATGGTGGGTGTGTGGAGTGATTGTGTGGTAGGGGTCGGTGGTGTTGGTGTGTGAGTTGGTGATGGAGATGTGTGGCAGTGGGGTGTGTGGTAAAGTTCTCTGGTGATGGAGTTTTATGATGGTGGTGTATATGGGAGTGGGCTATATGGTGGAATCCTGGGGTGGTGTAGGTCTTTGGTGATAAGTGATGACTTAGATGGGAACAGGGTGTGAAGTGAGACTGTGTGGATAGGGTTTGTGGTAGTGCTGTACAGAGGTAGCATATGTGGTCTCAGTGATATGTTAGCAGGGTATATGTGGTGAAGTTCTGGGACAGAAGTGTGTGAGAGAGCATTAGGTAGAGTGGGGACTAGGATGACACATGGATGGAGATTGTGACTAGAGAGAGCTGGTCTAGAAATACTGCTATATTTTCCTATAAGAACTGTGAGAGTGCCATCACCATTAGATCTTCACCCATGTTCCCGACCCTTCTCTGCTGTATAGTAGCTGTTGGGCTTTCGCCCGATGTCCAGCCTTAGGCTTCACTCTTTAAAACAGGGCAGTGATGATGCTAGGCCAAATGGGACAGTGCTTTGCAAACAGCGAGTATGCGATACTGTAGATTTTATTGCCTTTGCTTCTCTAATTGGAATAATACTGGAAGGGTATGAGTAGGCTTAGGGGTAGCATGTTTGCTTACAATGCCCCAGGCCCAGGAGTTGAGCCATGGTACTGAGAAGGAGGAAGAGGAGGTAGAAAAGGAAGAGAAAAATGAGGAAAAAGAAAGGAAGAGAGGAAACAGGGAGAGGAGGGGGAAAAGACATCAAGAGATGTCAAAACAACTCTGCCCCATAGGAACTGCCAAACTCACTTCTGGGGGGACTGGAATGATCCTTGGGATTAAAGTTGCATGAAAGTGTGTTCCCTAATCACAATAGGAAAAGCAGGACAGGAACCAGAGAGCCGGTGGGACTAAGCCATCTTCTTCCCATGATTGGTTTTCTGATGCACAGTGCAACACCAGGCCTATAGCATATTTCAGGGGACAGTGAGGCATGGTTTAAAGAAAGAGGCATTGCTACACAGTCCTAGGGGAATAGCAAGATCCAGCTGCCCACCATGTGGCTTTGAGTCTCCCTTCTTCTGGGCCCTACAGGACCACTTCAAGAAGCAGGTGGCAGTGAAAGTAACCTCCCGTGTTCTCCACACATGTGTAGCCAAGCTCTTGAGAGGCCTATGTGTGTATATGTGTGGGGGGGGGGGGGCTTGGATTAGTGTGGGTTTTCTATCTATGCCCTTTTGTTGAGTCCTTCTTGCCTGTATGTGTGGGAAGGACAGGCCTGTAAGGTAAACTTTTTCCAGGCCCTTCAGACTTGACTTCTAGACCCTAAAACTTTCTTCCTCTTCTCCGTTTCTTTGAG
Seq C2 exon
GGGTATGTGGCCGGCGAATGAGTAGCAGATCCCAACAACTTAACAATGCTTCTGCTATCGTGGAAGGCAAACCTGCTTCTGCTATCGTGGGAGGCAAACCTGCAAACATCTTGGAGTTCCCCTGGCATGTGGGGATTATGAATCATGGTAGTCATCTCTGTGGGGGATCTATTCTCAATGAGTGGTGGGTTCTATCTGCATCCCATTGCTTCGACCAACTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966:ENSMUST00000022537:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.7=61.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types