MmuINT0127540 @ mm9
Intron Retention
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine, 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64723160-64728523:+
Coord C1 exon
chr14:64723160-64723280
Coord A exon
chr14:64723281-64728297
Coord C2 exon
chr14:64728298-64728523
Length
5017 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
CTCTTCTCCGTTTCTTTGAGGGG
3' ss Score
-0.69
Exon sequences
Seq C1 exon
AGTGTTGGAGCTCCCCATTGCTGATGTGCAGGCAAGCCGATGAAACGATGGAAGGACAGAAGAACAGGCCTGTTGCTGCCATTGGTCCTCCTGTTGTTTGGGGCATGTAGCTCACTGGCAT
Seq A exon
GTAGGTTTCTGGGGACTCTGTGGCTCAGTCCCTAAGGGTGGTAGAATCACCCGGGAACTAGTTCCAAAGGAAACTTCCCAGGGATAGTGATTCAGTACTTTGGGGCAGGGGTGGGGCAGGATTTAGGGATCTGAGGCAGCTGGTTCTTGACCAAATGATCACTGGTATTCTTATACCACCTGTCCTTTAAAATTGTTGGGGGTTGGGGAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAAATTTGTATCTGAGAAATTTGTATTAGAGTTTCCTAGAGTGAATGGCCATACCAGTACACATTTCAGAAAAGGCACCCAGCTATTGGGTCACTGGTGCATAGTGGCTACATCAGGAAGGCTTAAGTCCAGCAGGATCTGCAGAGAGACTCTTCCTTCTTCCACCATGCTGAAAACCTTCTGAATGATCTAATGTCAAGTCTAATATATTACATCACTCAAGCAAGGCAGGGCATCAGTATCCCCTGTGATGGGCTCCTGTTTGAGTACAGAGAACGTATACAGTTTGGGTCAATGAGGTGGTCAACAAATTTCAAGCCTCTGCCACAGGGTGTGCTGTTTTAGAGACTGTATTTATAGTAGAGGAGGACAGAGTTTTCCTCAGTATGGTAGTAGGGATGGGCCTTAAACAAACACAAAAGCTGGGCTGTTGGTTCGGGCCTCTAATCTAGCTACTGAGGACGATGGGTCAAGGGGATCTCAGGTTCAAGCCTAGCCTAGGCTACAGAGTGAGTTCAAGACTAGCCTGGACAACTTAATGAGATTCTGTTCCCAATATAAAAAGTGAAGAGGGTTGAGGATAGCCACTCACAAGTAGGGTACTTTCCTGCAAGCAAGGAACCCTAAAGTCCACACCCAGTATGGCAGCAAAACCCCTGAGTAAACCTTGCTGTCTGTCTTATACAATGGCAGGAAACAGACAAAACAGACTGGTGTTGTTGGAAACCTGGGTGGAGCCGAAGGAATTGGCTGGTCAGGTAGAGTCTTTCTGCACTCATGATATTTGCTTTCCCTGATGGGGAGGCACACTTACTGCAAGCACGGGGTAAAGACTCTGCACACAGAAAGAGCTTAATGCATTGCAGAGGCAGACAGGCCAGCAAGGGGAAAAGGGCTCAGCACAGAGTGGAGAAACCTGCAGGGCCCAGATATGCCAATCTTTGTCAAGATGCCGAGCTCCTTGGTTCTTCTAGACTGGCCAGCCAACAAGTCCCAGGGATGTTGTCTCCATATCACCAGTGAGGGTACCCACTGCTGTGCTCAGAATCTTACCTGGGTTCTGCAGGATCAAACTCAGGCCTTGGCACTTGCATAGCAAGCACTTTACTGAGCTATCTCCTCCTCTCTGTCTGCTCTTGACAGTGATACTGATGGGCTGATTATAGGCTTTAAATCTGGCAAGATAGTATCCATCCATAGGGCAGTGTGGACCACTATCAGTCATTACTCAGCTCTGAAGCCTGCAAGGCTACGCACCGCCATCCATCCCAAGACTTCAGAGGACTCTTTCCATTTGCTCCTGAGAGACATTTCTCGGGGCTGCAGGACTCCACCTCTCACCAGCACCCAGACTTCTGGCAGTTCTGCTAAGCCTAGATGCACCATCACACTGCATTTCCCAGAGGACAGCAATAGTCACTTAAGCACTCATCAGACCCAGCTCTCCAAGGAAGCCTTGCTCCCACCTCCACCCTCAAAAGCCTGCCTTCTGGGTGGATAGGGTCCCAACAATCGATGTTTGACTAGAACCTCTCAGGTTCACCCCAGTGAGCAATTATCCAAACCACATGCTATCGGTCCAATTAAGGCTTTTAAAGGTTGGGCAGGTTGGGCGGTATGTGCTATTACAGAAGCTCTGAGCAGAAAGGGGTAGCTGGGTTTAGAAACAGTTGGACTAGCTGGAAGTCCCTCTCTGCCCCTGCTTTTGCGTGAGCTTGAGTGATCAGCTTCTTTCTTCACCTGTAAAGTGGGACTGCGGATATCCCGGGGAGGGTTTGGGGGATTATTAAGAGTCTGTTGCTCATGCACGCAGCACAGTAGCTGACTCAGGGAAGATCCTCAACAGGTGACATATGGCACTATGTTTCAAAACGAGGGGAGGACTAAAACGAGTCATTTTGCGAACCCAACCTGATTTCGAATGACATCATTTTGTGTACACGTTCAAAGCAGCCATCTCAAATCAACATTTAGTTTCTCCCACCCCAGGCCAACACGCCTGTTTTACTGTACTGTAATTCCTCTTGCTGGAATGCCAACTGTCTCTATCTGCGATTAGATTGCAGGTGCCTTGTAGGATGCTGGGGTCCATCAGGAAGGGAAAATACGCCTCCTTGATATGAGCAGGGGAGACGAGGCAGGGATTCCTGCAATGACACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCCAATCGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAAATGCAATGGCACTTCTGCAGACGGCCCACTCTTCCTCAAATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAAATGCAATGACACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCAGACGGCCCACTCTCCCTCAGATGCAATGGCACTTCTGCCAATCGCCCACTCTCCCTCTTCCTTGGCTTCCTGATTTGGGAGCTCAAAGGGTTGATGCCTTTGAATGAAGGCTCCTCAGTCTCTGGCCATCTCTTCCTGACACTGGTGGTTTAAGCAGTTTTACCATTAATACTGCCCTATGGATGGATACTATCTTGCTAGTACATCTACACACTCATCTGGTCCACCCACCTATCCAAACATTTATCCACCTACTCCATCTATCCATCTGTCCAGTTTATACCATCCCCAATACATCCATTTATTCCAGCACTATGTACTGGGCTCCTGCAACGTACTAGTCTCTTGTCTAGGTGGTGTGGCCATAAGAATTAGTCACATATGGCTCCTGCCCGCATGGAGATTAGACTCTAATGAGAGGAGCCGATGTCAAGAGTTTGCAAACATTTGCTGACTATTGCTGGTGTTCTGAAGAGAATATCTCATACAAAAATGATATTGCAATAAAGGTAATTTAAAATTACATCACACACACACACACACTCACACATACACACACACACACACACACACACACACACACACACACACACACACACACACAGAGTACCCCCATAACCCACGCTAGCCTCAAACTCCAGCTTCTCCTGTCTCAATTTTGCCCAGATCAGCAAAACTCACTTTCCGATTGAGGTAAGATGCCAAGGACACACAGGGGCACAGATCAGGGAGGAGAAAGGGGAGGGGCCCTGAGGCAGGAAACTGCAGGTCACTTCTAGGGAATTGAAAACAGGCCTATGATGTTGGGAAAGAAATGGAAAGACAGAGAAGCAATGGTTGGCCGTGGGGGTGGCAATGTTAGGTGGTGACACAGTGATTGGTGATGAATGGTGGGTGTGTGGAGTGATTGTGTGGTAGGGGTCGGTGGTGTTGGTGTGTGAGTTGGTGATGGAGATGTGTGGCAGTGGGGTGTGTGGTAAAGTTCTCTGGTGATGGAGTTTTATGATGGTGGTGTATATGGGAGTGGGCTATATGGTGGAATCCTGGGGTGGTGTAGGTCTTTGGTGATAAGTGATGACTTAGATGGGAACAGGGTGTGAAGTGAGACTGTGTGGATAGGGTTTGTGGTAGTGCTGTACAGAGGTAGCATATGTGGTCTCAGTGATATGTTAGCAGGGTATATGTGGTGAAGTTCTGGGACAGAAGTGTGTGAGAGAGCATTAGGTAGAGTGGGGACTAGGATGACACATGGATGGAGATTGTGACTAGAGAGAGCTGGTCTAGAAATACTGCTATATTTTCCTATAAGAACTGTGAGAGTGCCATCACCATTAGATCTTCACCCATGTTCCCGACCCTTCTCTGCTGTATAGTAGCTGTTGGGCTTTCGCCCGATGTCCAGCCTTAGGCTTCACTCTTTAAAACAGGGCAGTGATGATGCTAGGCCAAATGGGACAGTGCTTTGCAAACAGCGAGTATGCGATACTGTAGATTTTATTGCCTTTGCTTCTCTAATTGGAATAATACTGGAAGGGTATGAGTAGGCTTAGGGGTAGCATGTTTGCTTACAATGCCCCAGGCCCAGGAGTTGAGCCATGGTACTGAGAAGGAGGAAGAGGAGGTAGAAAAGGAAGAGAAAAATGAGGAAAAAGAAAGGAAGAGAGGAAACAGGGAGAGGAGGGGGAAAAGACATCAAGAGATGTCAAAACAACTCTGCCCCATAGGAACTGCCAAACTCACTTCTGGGGGGACTGGAATGATCCTTGGGATTAAAGTTGCATGAAAGTGTGTTCCCTAATCACAATAGGAAAAGCAGGACAGGAACCAGAGAGCCGGTGGGACTAAGCCATCTTCTTCCCATGATTGGTTTTCTGATGCACAGTGCAACACCAGGCCTATAGCATATTTCAGGGGACAGTGAGGCATGGTTTAAAGAAAGAGGCATTGCTACACAGTCCTAGGGGAATAGCAAGATCCAGCTGCCCACCATGTGGCTTTGAGTCTCCCTTCTTCTGGGCCCTACAGGACCACTTCAAGAAGCAGGTGGCAGTGAAAGTAACCTCCCGTGTTCTCCACACATGTGTAGCCAAGCTCTTGAGAGGCCTATGTGTGTATATGTGTGGGGGGGGGGGGGCTTGGATTAGTGTGGGTTTTCTATCTATGCCCTTTTGTTGAGTCCTTCTTGCCTGTATGTGTGGGAAGGACAGGCCTGTAAGGTAAACTTTTTCCAGGCCCTTCAGACTTGACTTCTAGACCCTAAAACTTTCTTCCTCTTCTCCGTTTCTTTGAG
Seq C2 exon
GGGTATGTGGCCGGCGAATGAGTAGCAGATCCCAACAACTTAACAATGCTTCTGCTATCGTGGAAGGCAAACCTGCTTCTGCTATCGTGGGAGGCAAACCTGCAAACATCTTGGAGTTCCCCTGGCATGTGGGGATTATGAATCATGGTAGTCATCTCTGTGGGGGATCTATTCTCAATGAGTGGTGGGTTCTATCTGCATCCCATTGCTTCGACCAACTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966-Prss52:NM_028525:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.7=61.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: