MmuINT0127543 @ mm9
Intron Retention
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine, 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64731319-64732588:+
Coord C1 exon
chr14:64731319-64731461
Coord A exon
chr14:64731462-64732303
Coord C2 exon
chr14:64732304-64732588
Length
842 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCACAACTTTTCTTTCCTAGGGC
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTGAAAAAGGAGTCCAACCCACAATTCTGCAGGCAGTCAAAGTGGATCTGTACAGATGGGATTGGTGTGGCTATATTTTGTCTCTATTAACCAAGAATATGCTGTGTGCTGGGACTCAAGATCCTGGGAAGGATGCCTGCCAG
Seq A exon
GTAAGGGGTTGGGCTCACCTGGGAAGGGTGGCTGGCTTTTCTGTCCAGTGGATGAGATACCACAGCAATTTCTTAGGGCCACTGTGACAAATAACCACAAGGTGGGTGGGCTTTAATCAATGTACATGATCCTACCATGACTTAGGATCATACAAGCCCTAAATCAAGATGGGGGCAAGGCCTGTTCCTTCCTAGGTCTAAGAGGGGAGCCATAGCCACCTCTCTAGATCCCAGTGTGGCCTTGCTCTAACCTCTGTCTCAGTCTGTGGAGGACCTTCTCTCTTATGAGTGTGGCTTCTGATTTATTTATTTCCCTACACCATTTAAAATGTGAAGATTTAAGTATTAACATGTTACCATTTTTAACATGATACCGTTCTTTTTGCATTTGCCATATATCCATCTGTGTACCTGGTAGATCCAACCAATGGCTTCCTATGAGGCATGGTGGATTTTTGCTTACTCTGTTCACTTTTTGCATTTTTGAGTAAAATAGAGAGCGCTGAACTGATAGAAAACAAATTTGTGGGAAAAGCACAAGCCTTTGATACAAGATATATCAAAATGAATGATACATTAAATCAATAACGATCTCGGTGGTGATGATGGTGGTGGTGATGGTAGACATCAGTCTTTCATGTCATCACTTACCCAATTGCTTTTGCCTACATGGTTTGCTACGTATGCAACAGTCACACCCCTGTGGCTGAAAAACTGAACAATAGCCAGAAACTGCCATGGTAGGAACCCTTCAGTACTTTTGATCAGACACCCACACTTGAGCAGATTATGGGAGCAGTTTCCCTATTGCCCTCAACTTCCCCACAACTTTTCTTTCCTAG
Seq C2 exon
GGCGACAGTGGAGGAGCTCTCGTTTGCAACAAAAAGAGAAACACAGCCATTTGGTACCAGGTGGGCATTGTCAGCTGGGGCATGGGCTGTGGCAAGAAGAATCTGCCAGGAGTATACACCAAGGTGTCACACTATGTGAGGTGGATCAGCAAGCAGACAGCGAAGGCGGGGAGGCCTTATATGTATGAGCAGAACTCTGCGTGCCCTTTGGTGCTCTCTTGCCGGGCTATCTTGTTCCTATATTTTGTAATGTTTCTTCTAACCTGATGATTAAACGTGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966-Prss52:NM_028525:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=53.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCAGTCAAAGTGGAT
R:
TAGGAACAAGATAGCCCGGCA
Band lengths:
357-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: