MmuINT0127543 @ mm10
Intron Retention
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64112482-64113755:+
Coord C1 exon
chr14:64112482-64112624
Coord A exon
chr14:64112625-64113466
Coord C2 exon
chr14:64113467-64113755
Length
842 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCACAACTTTTCTTTCCTAGGGC
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTGAAAAAGGAGTCCAACCCACAATTCTGCAGGCAGTCAAAGTGGATCTGTACAGATGGGATTGGTGTGGCTATATTTTGTCTCTATTAACCAAGAATATGCTGTGTGCTGGGACTCAAGATCCTGGGAAGGATGCCTGCCAG
Seq A exon
GTAAGGGGTTGGGCTCACCTGGGAAGGGTGGCTGGCTTTTCTGTCCAGTGGATGAGATACCACAGCAATTTCTTAGGGCCACTGTGACAAATAACCACAAGGTGGGTGGGCTTTAATCAATGTACATGATCCTACCATGACTTAGGATCATACAAGCCCTAAATCAAGATGGGGGCAAGGCCTGTTCCTTCCTAGGTCTAAGAGGGGAGCCATAGCCACCTCTCTAGATCCCAGTGTGGCCTTGCTCTAACCTCTGTCTCAGTCTGTGGAGGACCTTCTCTCTTATGAGTGTGGCTTCTGATTTATTTATTTCCCTACACCATTTAAAATGTGAAGATTTAAGTATTAACATGTTACCATTTTTAACATGATACCGTTCTTTTTGCATTTGCCATATATCCATCTGTGTACCTGGTAGATCCAACCAATGGCTTCCTATGAGGCATGGTGGATTTTTGCTTACTCTGTTCACTTTTTGCATTTTTGAGTAAAATAGAGAGCGCTGAACTGATAGAAAACAAATTTGTGGGAAAAGCACAAGCCTTTGATACAAGATATATCAAAATGAATGATACATTAAATCAATAACGATCTCGGTGGTGATGATGGTGGTGGTGATGGTAGACATCAGTCTTTCATGTCATCACTTACCCAATTGCTTTTGCCTACATGGTTTGCTACGTATGCAACAGTCACACCCCTGTGGCTGAAAAACTGAACAATAGCCAGAAACTGCCATGGTAGGAACCCTTCAGTACTTTTGATCAGACACCCACACTTGAGCAGATTATGGGAGCAGTTTCCCTATTGCCCTCAACTTCCCCACAACTTTTCTTTCCTAG
Seq C2 exon
GGCGACAGTGGAGGAGCTCTCGTTTGCAACAAAAAGAGAAACACAGCCATTTGGTACCAGGTGGGCATTGTCAGCTGGGGCATGGGCTGTGGCAAGAAGAATCTGCCAGGAGTATACACCAAGGTGTCACACTATGTGAGGTGGATCAGCAAGCAGACAGCGAAGGCGGGGAGGCCTTATATGTATGAGCAGAACTCTGCGTGCCCTTTGGTGCTCTCTTGCCGGGCTATCTTGTTCCTATATTTTGTAATGTTTCTTCTAACCTGATGATTAAACGTGAGACTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966:ENSMUST00000022537:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=53.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGCAGTCAAAGTGGAT
R:
TAGGAACAAGATAGCCCGGCA
Band lengths:
357-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types