RnoINT0083398 @ rn6
Intron Retention
Gene
ENSRNOG00000047632 | LOC683422
Description
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor) [Source:RGD Symbol;Acc:1586868]
Coordinates
chr15:47473782-47474968:+
Coord C1 exon
chr15:47473782-47473924
Coord A exon
chr15:47473925-47474704
Coord C2 exon
chr15:47474705-47474968
Length
780 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCCCAACTTTTCTTTCCTAGGGT
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTGGAGTAAAAGTCCAAACTACAAAGCTACAGAAAGTCCAAGTGGATCTGTTCAGATGGGACTGGTGTGGCTATGTTTTGCCTCTATTAACCAAGAATATGCTATGTGCTGGAACTCCGGATGGTGGGATGGATGCCTGCCAG
Seq A exon
GTAATGGGTTGGACGCTGCCTGGGAAGGGTGGTTGGCTTTTTGGTCCAGTGGATGAGATACCACAGCATTTTCTTAGGGCCACTGTAACAAATTACCACAGGGTGGGTCGATTTAATCAACATACATGATCCTCCCATGACTCGGGGTCACATGAATCCTAAATCAAGATGTGGACAAGGCCAGTTCCTTCCCAAATCTAAGAGGGGAGCCATGGACACCTCTCTAGCTCCTGATGTGGCCTTGCCCTAACCTCTGCCTCAGTCTGTGGAGAACCTTCTCTCTTATGAGTGTGGCTTCTGGTTTATTTATTTATTTCTCTACATCATTTAAAATGTGGCAGTTTAAGTATTACATTTTGCGTTTTTAACATGACACTGCTCTTTTTGCATTTGCTGTGTATCCATATGCATACCTGGTAGATTCAACAATGACTTTCTCTGAGGCACAATGGATTTTTGCTTATTCTGTTCACTTTTTGCATTTGTAAGCAAAATAGAAAGAGCTTGGCTGATAGAAAATGAATTCGTGAGAAAGGCACAAGCTTTTGATACAGATATATCAAAATGAATGAGACATTAACCAATAATAATATCACCCAATTGCTTTTACCTAAATTGTTTGCTACAGCCACACCCCTGTGGCTGGAAAACTGAACAAGAGCCAGAGACTGCCATCATGGGACCCCTTCAGTGCTCTTTGTCAAGATGCCCACACTTCAGCGGGTTCTGGGAGTAGCTTTCTTATTACTACCCTTCAACTTCCCAACTTTTCTTTCCTAG
Seq C2 exon
GGTGACAGTGGAGGAGCTCTAGTTTGCAACAAAAAGAGAAACATAAATACTTGGTACCAGGTGGGCATTGTCAGCTGGGGTGTGGGCTGTGGCAAGAAGAATTTGCCAGGAGTGTACACCAAGGTGTCACCATACCTGAAGTGGATTAGAAAGCAGACTGCAAAGGCGGGGAAGCCTTATGTGTATGATCAGGACTCTGCGTGCCCTTTGGTGCTCTCTTACTGGGCTATCTTGTTCCTATATTTTGTAATGTTTCTTCTAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047632:ENSRNOT00000072438:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAGAAAGTCCAAGTGGA
R:
AGCCCAGTAAGAGAGCACCAA
Band lengths:
347-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]