MmuINT0128548 @ mm9
Intron Retention
Gene
ENSMUSG00000047250 | Ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:MGI Symbol;Acc:MGI:97797]
Coordinates
chr2:36086188-36092843:+
Coord C1 exon
chr2:36086188-36086283
Coord A exon
chr2:36086284-36092726
Coord C2 exon
chr2:36092727-36092843
Length
6443 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TACTTGTTTCTCACCCACAGTCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GAAGGAGTCTCTCGCTCTGGTTTCCCCTGCTGCTGCTCCTGCTGCTGCCGCCGACACCCTCGGTCCTGCTCGCAGATCCTGGGGTGCCCTCACCAG
Seq A exon
GTAGGTGCCCCCGCCGGATGCCCGTGAAAATTCCAAGTCCTGCGCCGTGGGCTTGGTCCATCTCCCTTCCAGGCGGACTCCCTGATTCCCCTTTCTGCTCGCGGTGCCGGGGAATAGGGTGTTGAGGTTATGGAATGGGGTCCCTGGAGAATGGCTAGGGCCTACCTGGGATCTCTCTGGCACACAGCCCACTGAGATCCCGAGTCGGCAGGGGAAGCAGAGACAGGTTCTTTAACTTCTCACCTGATATGTGGTCCGACTTTCCAAGCAGCCTCTGTACCCCCCCCCCCCCCCCCCCCCAGAACTCGGCGGTTTCCTGTGGGGGCTCCTTGGGGAGGAAGCGGCAGACGCCAAGGGGAAGGCGGGCTGGACACTGAGTTCCTTTTCTTTGGCCTCTAACTTTTGGGGAGTCTATCTTAACGCTCAACCTATCTCCCCAACGGTAGATACAGGGATGGGGGTGGGGGACACCAGCTATCCTGGGAATGGGGAAGTGGGCACATAGTGACCAGGAAATTGAGGTTCAGTAGGTGCGATAACAGCCCCAAGTCACATAATGCATAGTGGGCTCAGGGTTTGAATTCAGGATCAGCCTAATCCAGTCACTCTCAATACCTGCAGTGGTTCAAAGAAGCCAGTTCTGCAATTCTGTCCCGCTTCTCTCCCTCAGGGCAGAACCAGGTTCTAGGAAAGAAAAATAATTTACTCCCCGCCCCCCCCATACTTCCCCTGCCCTCCACCTTTCCTTCCTCTCTTTACAATTTGGATGCCCATCTGTAAAATGGGGCCAAGAAAGGTTGGCAGTGGGGGAAAGGGATACTACAGGACCTTGGAACTCAGAGGACAGAGTGGCCTGAGAATCACAGCAGGCTTCCTGGAGGATGGGGTTTGAGTGAGAAAAAGAGCTGGGGACACCTGTGCTAGAAAGGTGACAGTCTGGGTTTTTGGAAAGGAAGCCATTTGTGATCCAGCACTGCAGTTTACCAAGATTAGCTGTGCGTGCCTTTTCTTTGGTGCTCACAGCAGCCTTGTGGGAGGCAGATGCGTTAAGTCCATTTTGTAGATCAGAACTTTGAGAGGCTCAGGAAGTGGGGCCACTTGTTGGAGACCCCACAGTGAGCTGATGGTAGAGCCAAGGCTGACATGTTGGCCATGCTGACTTTCAGTTTCAGCATGAGTCCAGCTCTCACCTGACCCTCCACCCTTTGAGGATCCGGTGTTCATGCACCTGTCTTCCTTGCTGGGATTCTTTTAGGGAAAGGGTAGAGTTCAGCTTGGAGGGCAAAGCTGTGCCAGGGAATCCACAAATGTTCAAGTTCATCCCTTCCAGACCCTGGGTTTGGCTTGGTGTCCTCCCTTTAGCCTGGGAGTAGGCATGACTTGGTGACCCAAGCTGCGCCTGACTAGAGCCACGGTGTCCCCTTTGCCTATAGTCATATTGCAAGTGCTGTAGTGGAATTTTTCTGTTTTGCATTCCAAGGGCTTTTTCTATTTGAGCCTTTGGCTGGGGCCTGGTGACACAGAGGTCACAGTCTGATGTGGAGTGATGTAGGTGCCCAGAGTGACGCTGGAGTCCACAGTCTGATGGTGGAGATAGGCGCCAGCATGTTGTTAAGTAGGAGAGTGAGGGCTGTGGCGAAGGGTGAGAGAGAAGTATAAAGATGTCAAAGAGGGAGTATTGACCCTGTGTTGGTTAGGGGCTGCAGGCTGCTTTAAAGGATGATGGCTTTTGTCTCTCATTGGGTGGGGGGGATGGCATCCTATTTGAGCTCAAGGCTGTGTGCTGGGGATTTATAGTGTTCAAATGCTTGCCTTCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTAACAGGTAGCTCTGGCTGTCCTGGAACTCACTATGTAGAATAGGCTAGTCTTTTTTTTTAATTATTATTATATATTTTCTTTATATACATTTCAAATGCTATCCCAAAAGTTCCCTATACCCTCCCTCCGCCCTGCTCCCCTACCCACCCACTCCTGCTTCTTGGCCCTGGCATTCCCCTGTATTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGCGCTCTGGGGGTACTGGTTAGTTCATATTGCTGTTCCACCTATAGGGTTGCAGACCCCTTGGGTGCTTTCTCTAGTTTCTCCATTGGGGGCCCTGTGTTCTATCTTACAGATGACTGTGAGCATCCACTTCTGTATTTGCTAGGCACTGGCATAGCCTCCTACGAGACACCTATAACAGGGTCCCTTCAGCAAAATCTTGCTGGCATTGTGCAATAGTGTCTGGGTTTGGTGGCTGACTATGGGATGGATCCCGGGTGGGGTAGTCTCTGGATAGTCCATCCTTTCATCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTACATGGGTATTTTGTTCCCTATTCTAGAACAGGCTAGTCTTGAACTCACAGAGCTCCACATGCCTCTGTCTCCCTAGTGCTGGGATTAAATAAGTGTGCACCAGCATGCCCGGCCCATTTATGTGCCCAGGGAGAGGGCATGGCCTGGTGAGTAGAGCTGTGAGGCTAGGCTGACTCCTGCACGTGGGGTGAGACTTGAACACAGGCCAAAGCCTCCCTGTGTCTTTCTCGGCTTCTCCTATCTTCAGCCCCAGCTAGGTAGGTCTGTGTACCTGGAGGGCCTTACTTTCCTGCTAGAGGTGGCTACTTGGGCCTGCCATGGAGGTGTCTACCCTGGATCTGCCTACAGGCATGGTGTCAGGGAGGACCCAAGTCTGGCTACTCGGGCTTGCTTTCCTCTTGGACGCCAGGCCCCTGGAGCTTCTGTAAATATTATTCTTAGGAGATTTGGATGCAGCCTCTTCTGCCTGATGTTGTCCACACATCCTGGAGAACTCAGTGTTCCCTAGCTGTAACCTGTTCTATGCCCTGCTTGGCTGTGAGTCCAGATCCCCCCAACCTTTGGGCTGGAGGACATCTTACCCCAATCTATGGATGGGTTTTAGAGTCGGGACATCTTGGTCAGGGGTTATCTGGGGGAATGTGGGTTGGCTGCCTTGACCTTCAGGTCTGTGTTTTGCAGCACCATGGTGGCAGTCCATCGTCCTGCTTCATGAGTGGCTGGCGCTCAGTGGGAATGGTCGCAGGGTTCTGGGCTGAGGGTAGGAGAATGATGGAAAAAATTTAGAGGCCCAGCTTGGCTTTCCCTAGAGTACAGACAGGGTGGGGAGTCCCTTTGAGATACCCGCTCTCCCTACTTATGGACTAGACAGGAAAACAAGGCCCTAAGTGTGGAAGGCACTTATTTATGAATATGGCCAGAGACAGCATCACTTCCCAGTTCATCTTTCCTCTACTCTTCTTCCTTGGTAGCTGACTTGTGCTTGAACGTGGGTCACTGGAATTAAATTAGACTGTATGCCTGTACCTCCTAGTGCTCTCCTCAGATGGCTCCTTAGTTCCATCAAGAAAGACAGGTGGTCTCTGTAGAGAAGACCTCTCTGTAGTTAGCCAGAGAGCTGGGTAGTCTCAGTAGAGAGATCTCCCCTGCTGCTTAGAGGCGTGGGTGGGCATGGGGATCATGCAGAGGTGAAGCCAGAGTTCCTGTTGAATGCTGGAGGTCGGCTTCTGGCAGGAGGCTGAGGCACAGTTTCTCACATTCACCTTGTTTACAGTTCACCTTGAAGAAACAGCAGCATCTTTAGCCTTTGGATCATCATGACTGTTGTATCCTTCCCCTAAAGCCAGCCCCAGACATCCCAAGATGAGTCAGACAGGGTGAGGGAAGGAGGTTTACATTTTGGTTCTGCAGCCTGGAAGCTGTGGGGCTTGCGTGTAAGCCTCTTGCCTTCCCTGAGCCTAGACTTCCTCCTTGTGCAATGGGAGGCTCACGTGCGTGTCTTCCTGCTAGGTGCTGGATGCTCAGTCAGTGACAGCCCCATTCCCCAGCCTGGGGGCCACAGTCAGCATGACCACTGGCACCCGGTCTCCTCTCCACACACTTTCATATCCCGAGGAGCTCCTGTGGTTGTTGTCCCTGCCCAAAAGGACTTTTCCTGTCCTGGGGCAGCTGGTGTTTATGGAAAGAAAGTTGGGAGGAGGGAGGGCAAGCTGGCCACAGTTTGGTTGGGAGGGAGGGAGGGCCCTCTTTTGGATTGAGGTGGGGCATGACATCCTGATGACATCAGGAGGCCTCACAGCTTGCCTCAGGGGGCTGCTGGGAGGATGAAAGCTTCTCTCTGGCCAGCAGGGGATGGCTAGTCTCATCACGCTATTTTGTTAGTTCCACACACATTTGTTAAGCTTCGGTCACTAGTGGTTCCCTGAAAGCAGATGGGCCAAGCCCAGGCTGTGAGCCCAGCCCAATGGGGAGATGAATGTCTGGGAAGGTGTGGCCTTCTCTCAGGGTGGAGAACAGAGAGCAAGACTTGGAGAGCCTTGGGCAAAGGGCAGAGGGCAGAACAGGATTCCTTGGGGGGAGGCTGGAAGATGTGTGAAGGAGAAATATAGGCTAGGTAAGGGTGGGGTGAGGGAGGGTTGCTGTAGCCCCTTTGAGATTCAGAACCCTTGAGACTTCTGCTGACGTCGAAGTAGGAAACTGGGGCCAAGAAGAGCCCCTTCCTTCCGTCTCTGCCTTTTGAGTAGTAGGAGTGTATCTTTGGTAAGTGAGAGCCCTTAGGCTGGAGTGGAAGGTGGGGGTGGCTAGGCTCACAGCAGGTGAGCTGAACTTGATCAATGATCAGAGAGAAGGGTTCCAGACCTGCCAGGCTGAAAGTGGATCCAGGTATCTTTGATCTTTCTGGGACTGTGATGAGCTGGGGGCAAATTTGGGGACGGGGACCTCTGGGGTCCTGGCAAGTCTCATCCCTGGGTCTTGTTGCCAGATCTGCCTGTGCAGCTTGGAAAGGCCGTTTTTGTCCAGCCTTCTTCCCCCTGGCCTCTCTCTTCTATACTTCTGCCAGAGATCACAAAAATGCCATTGTGGGGTTGTTCAAAGTCACCAGGGCTTAAACAAAACTATTTGCATGCATGGCCCATATGCTTTCTGCTGGTATGTGTGTGGCGATGGTGGTTCTGGGGGCATCTGGAGGCCCCTGGAGGTGGAAGGGAGGGTGCTGTACTGCTGAAGTGAGCCTCTGAGGTGAGTACACAGGCCTTCCAATGTTGGCCTCCATGACTGGCCAGTTCATGCCAGGCTACTCCGACTTCTTGCCACCCTCTTGACCCTAATCATCACTCACACAATGTCAAAGCTCCCTATGGTGTTGGCTCTATGCCCAGAAAGAGCCTTGTTCACAGAAAGGATTTTGACGTTTCTGTGTAAGCCAAAGCAAGGTACCTCCTGCCCGGAGCCAGGAGTCTGCCAGGTTTTGCTCTGCTTTTGGCAAAGCCTCTATCTCTCCCTGAGCCCCAGTTTTCCTGACTGAGCAGTACGCAAAGGCAGGGCTAGACCTGGATGAATTGTGTGACTGTTTAACTTGGTTGCTGAAGAGTACCTGAGGCCACAGAGATATAGAAAGAGAGTGGCAGTAAGAAGGATGGGACTTAGACACAGGGAGGGGCTTTTCTTGTTGGGGGTTCTATGAGGTAGGAGTAGGGAGGAAGGGGGTGGTGGATGCAAGAGTTCACGTACCGCTGTCTCAGATTTTCCAGCCAGGCTTCTTGTGATTTCTCTGTGTTTGACTTCTTCAAGATCTTAGGGTATAGACCGCAGCTCCACTTAGGTCAAGCCTCTGCTTTTCAGGGCAGCTGAGATCCCCCTCCTGGTCTCTTGTATTTTATCCTTGGTTCTGCAAAGCCTCTTTCCTGGAATTGATTGCTGAGTTTGGGGAGGAGGGGTGGAGAGGAAGTGAAGACATGGACAGTTGGCCTGATATGACCATTTCCTGGTGACCTTTTCTGGCCTTATTTTCCTCATCTGCAAAGTGGGCATAATGAAGCCTGATGTCCCCTCCCTTCTGCAGAAATGGAAGGCTAGGCAGATCCTGTGTTTCTAATATCTGGGTGCTCACAACCTAGGTGCTCATCTGGTAGAAACCTTCCCATACCCTGGCCTCCTCTCTGAAGCCCACAAACATGGCGTTTGTGGTGTTTGCCACTAGGCTCTGCCAAGGCAGGAAGTGGGGCCCATAACACATTGTCTTATCAGCTGTTTCCTAGCTTCAGCTCCACCAGCTTGGCTCTGGACTCTTTCTCTGACTATTTTCATGGTAGCAGGGAGGGATTGAGAACTTTCCCTTGGGCCCCTAGCATGGATTGGGCTGGAGGTCCAGGGCAGAGGGTGGGGTTTCCGTCTATGGTGTATGGGTGGGGCAGGGCAGGTCAGGAGGCTACTTGAGGGTATCTCTAATACTTGTTTCTCACCCACAG
Seq C2 exon
TCAATCCCTGTTGTTACTATCCGTGCCAGAACCAGGGTGTCTGTGTCCGCTTTGGCCTCGACAACTACCAGTGTGATTGTACTCGCACGGGCTACTCAGGCCCCAACTGTACCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047250-Ptgs1:NM_008969:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: