BtaINT0119661 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006716 | PTGS1
Description
Bos taurus prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) (PTGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105323]
Coordinates
chr11:93219422-93225986:+
Coord C1 exon
chr11:93219422-93219511
Coord A exon
chr11:93219512-93225869
Coord C2 exon
chr11:93225870-93225986
Length
6358 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCTCTGTTTCTCCCCCACAGTGA
3' ss Score
11.74
Exon sequences
Seq C1 exon
GGCAGGGTATCTCGCTCCGATTCCCGCTGCTTCTCCTGCTGCTGTCGCCGTCCCCCGTCTTGCCAGCGGACCCCGGGGCGCCCGCGCCAG
Seq A exon
GTAGGCGGCCTCTCTCCTGTCCCCGAAGAGCCCAGGTCCTGCTTCCCTGGCCCGGCACCCCATTCCCTCCTCTCCCCTCCCGCCCGCCCAGCTTCCCCTTTCGGCTCGCGATGCCTGGGAGGGGGGAGGGGGCTGTCTGTCGGTGGGATGGGGGCTCTCTGCAGACCCCCGGGATGTGGCCTGGGCTAGGTCCCCAGGGGGTTCTTTTTGCGGGGGAAAGGGCAGACTGGGATCTTGGGCGTCTTTGGGAAAAGGGACCGAGTCTTTCCAGGCCCCTCACCTGTTCTGGGACCCCAGCGGTCCCAGCCGAGTCGGTCCCCAGCAATCCTCGCTGTTTCCCCTGCGGGCCCCTTTCGGAGGAAGTCGCAGGCGCCAGGGGAAAGCAAGCTGGCGCGTTTTCTGTTAGCCTCTAACTTTCCAGGACCCGTCCGAATTCCCAGCCCCAGTGGAGACAATCTCCCTGGGTGAGGACCCCGGGTACACCCGCCATTCCGGAGAGAATGGAGGAGGAAACGCACTTACAGGGCTGAGCTGCTTCCTCTGGAGACTGAATCTTCACCGGGGAGGTCCCCATTGCCCGGATGAGTTAAAGGAGGCTCAAGTTGGGGCCATAGCGCCCTCAAGCTCACCCAGGACACGGTGGACTCCGGGCTGGAAGTTTCCAGTCGTTTTGCAGGGTCTTTCTGCAGAGTTCTCCCTGCCCTCATCTCTCCCTGCCAATGGACCCCCGTTTCTTCACTCCAAAGATGACCAGGAAAGTCCTATCCTGGAGAATTCCCCTGCGTGGCGTCATGCGTGTGCCAGGTTCCAGGTGGAAGAATGCAGCTCCTCCTTCCCATAGCCTCCCTCCCCACGCAGTTTCTGTGTGTGTGTGTGCGTGCACGTGTGCGTGTGCATGCTTGCACATGCAAGGTCTGGACAGAGCTTCACCAAACTATGTGAAACCTCCCCAGGGTCTTCATTTCTCATCTGCAAAATAGGGGCAGGAGAGGATGGGGAGTGATCTGAGCCTTCTGTTGTGATGCTCAGAGGAGAAAGAATTCGGTGCTCAGAGGAGAGGGGAAGGACATCTCTGTGAACTGGGAGTCAGACCAGGCTTCCTGGAGCAGGGGGTTTGAGTGCGTGGCATTTCGGGAAGCCAAGGAAAGGGTGCTCTAGGCAAGAGTTTAGGCATGTGTAGAGGTCTAGTTTGTCAGAAGACGAGGAAGAAGACTCCCGTGGCCAGCACTTTACAGTTTACAAAACCTAGCTGTTGGCTTCTCTGTTCACAGCAGTCCTGCCAGGGAGATGTTAGTCCCATTCTACAGAAGGGAACTCTGAGGCCCAGAGGGGTGAACCATTTGAGTCTCTGCTGACATTGGTCTGAGACCCCAGTAGCAGAGGCAGGGCTGACCATGCCATCCCAGTGGCCCGTTGTGTTAGCCCCTAGACCAGCCCAGCAGTTCCTCTGAGGCCCCATTCAGCCCCATCCGGGCCCCCGGGGCCCCGAGGCTCACCCTTCCTGTCCCCCTGTGTCTGTTCACCAGCCATGGGTGTACCCTTTTGCTTTTAGCCTTTTCTGCTTATCTTTATATTGTAAGTGTTTAAACAGAATTGTGTTTTTCACGCCACAAACATTCCCAGGGTATTGCTTTATGCCAGTCCTTGGCTGGAGCCTGGAGGCTGAGCTGGGAGGAGCTCGCAGGCCGATGGAGGAGACAGAAATGCCCACAGACTGCCATCAAGGAGGTCATGGCCATGACTGAGGGAACCTCAGGGGTGTGTGGGGCTTGGGGATGGGTGATGATTATCTCTCAGGTGTGAGGAATTGCAGAAGGCTTCTTGGAGGTGATGACATTTGACCTGGACCCTAGAGGAGGTGGTAGTGGGAGGTAAAATGGTGAGGTTTTACTCTCAAACTCTGGAAGGGCTCTTCCAGGCAGAAGCAAGGGTATGAGCAGAAGCCTAAAAGTCTGAGTGATGGGAGTGGACAGGCACAGGAAGCTGTAGGACAGAGGCAGGTGTTGGCGGACATGGGCCTTTGGATACAGAGTGAGGAGTGGGCTTGAGTCTCAGGATATCCCCCTGGGAGCAGGGGAGTGAGACGGGGTGGATGACTTGGAGGTGAGACTGGAGGCTGGGAGATCATGAAGGAGGCTGCTGCAAGGGTCGAGGAAAAGACGGAAGACAGGTTGGGGGTGGGCTGAAGGCTTCGCTGCCTTCCCATTGCCAAGTCTCTGGGTGAACTGAGGTCCAAAGTGCCCGGACACTTAGGAGAGGCATCTGCTCTGAAAAGCCAAAGCCTGTGTCTAGTCCCCAGAGTGTCAGCAAAGGCCAATCCCCCAGGAGATGAGGGCTTACCTGGGGGCAGGTGGCGGGGAGGATGCTGCTTCTGCCTCTCTTGTGATGGAAGGTGGAGTCCGGCTCAGAGGACAGGGCTGTCCTGGGGTATCCTCAATGCTCGAGTTCATCCCTTCCAGCTCCTGGACTTGGCTGAGTGCTCCCTCCTGGGCTAGGGATGGGGCATGACCTAACTGGAGCTCTGTGCCAGGCGGAGGGGCCTGAGGCCAGCTAACCCTGGCATGTGGGGCAGGCTTCCTGCGGCCTGCCACCTCCTATCTGCAGCACCAGCTGGGGCTGTGGGTTGGGAGGGGGCTTCCTTTCCAGCTGGGCTCTTCCGGCCGCCGGGGACTGGTGCGGTGGTCCCTGGCCACTGGCCGCTGCCCTTGCTGTGTGTAGGGGCTGGGGCCCACGTCTGGGCTGCTCCGGGCTCTTTTTTTCTCTTTGGCTGCCAACCTCCTGGAACTTCTCTAAATATTATTCTTACGGAATTTCAGTGCAGCCTCTTTAAAGGGCCCTCTTGCTGTCTGGTGCCTCTGCATCCTGAGAACTTGGTGTTCCCTCATTCTGCCTGGAATCCTGACTTCTGGGCTGGGGGACGCTTCCTTGCCGAATCCTCAGAAAGTTCTGGAGCCAGGCAGCCCCAGACTGTCCTCATTGGTGGGAATGTGTGTGCTATGGGCTTGCTGATCAACCCCACCTCTGGGGTGGCTTAAAGACTCAGAGCAAGCTGCTCAGTTCTCTGCTTATGGGGGGTGGGGATCATGTTGATGCAAGGAATCGAGATGTTTGGACATAAGTTGGCTTTATCCAGAGTTGAGAAGAAGAGAGGAAGAGAGGGAGGTTTCCTTAGAGCCTGTCTGTCCCTTCTCCTTCCTGGAAAACACTGAAAAATGAGGCCCACAGGACATGCTGTGAAGAGCAGGCACTCTCCCATGTATCTTCATCTAGCACCTGCTTGGTGCCCGGCCCTGTGCTGGGTGTGGGGACTCCAGACACTTTACACTCAGTGTCTGCATTTCCCCAGGTCTCTCTCTTGATGGTTTATTGTACAGCATGTCCTTCACTGGACACATGAAAGCATGTGGGATTTAAGTTAGACTGAAGGAAGGCCTTCCTTTGTGATTAGTTCCCAGCGCTCTAGCGTGGCAGGGGATGGTGATTCCTCTGGAGTCCTGGTTTCATTCATTCAGGATTTTCAGGTCCACCTGGAAGGAAAGGTAACATACCTGCCTCACCTGGGGTCATCCCCAGTCTGTGAAGCAAGGGGACTCGCCCTCCCAGCATCCCTTCCCCAAATCCTGGCCTGGGCACCTCCAGGAGGAGGAACGGAGGGGAAGGGAAGCAAGTTCAAGTGTTGCCTCTTTCGACTTTGAAGCAGTGGGGCTTGGATGAGCCCCTCGTCTGTGGTGGTGGCAGGGGGCCGGGGAGGAGTCTCACCCATCCCCAGGAGCAGATAAGTGAGGTGGATACACAAGGTTGGAGAGTCAGCAAGAGCCCTGACTTCCAGCCTGTCATGATAGTCCAGCTGTGGTTAGCCTGGGAGAGGGCAGAAAGTGACACCCATTTTCCTCTCTGCCCACCCTGACACCCTGGGGCCCCCAGCGACAGCTGCAGTCCTTGTTGAGGGGAGACTTTTCCTGCCCTGAGGCCACTGGTGCTTATGGAAAGATCTTGGAGGAGGAGGAGGAGGAGGGAGGGAAAGTTGGGCAGCCGGTCCAGGGGGAGGGGCCTCTGCTGGCAGGAGAGGGATGCCCTGGGCAGGAACTTCTGAGTCTGGGGGGCACGGCTCTGCTGCTGCTGGGCCCCTGGCAGGAAGCTCTCAGGCAAGACTTCAGAACCAGCTGTGTGTGGGGGGTGGGAGTTGAGGGAAGTGGATGGGGAGATGAGAGAACCTCTTTGACCAAGCTTGAAGTGGCCTGTCTCCTCGCTTCATTTTAAATTCCACAAACATTTGTTAAGCTCTGGCCACCGCATCTGGATTTCCTGGATGGATGGATCTCTCCAGGACCTGGGGTTGAGTTCCAGCTGTGCGCACGGCCTCTGGGAGAGGGGAGAAAGCCCAGGAAAGCCCTTTCTCTTGGAGGCTTGTGGTGGAGCAGAGCAGGTCGGGTTGGGACCTGGGGCCAGGGAGAGTGGAGTGTGAACATTTGGGGAGACTTTCTGGTACATGTGCAGTGGGCTGGGTCGGGTAGATTAGGAGGGGATTTACTTGGGAGGAACCACAGCCTGGGTCAGGGAGGAACAGAGCTTTTGGCTTTGGGGTTGCGAGATGGGCTGCCCCAGGACCAACTGGAAGGACTTCTTGAGTTGGATTTGGGATCCCTACTGGCAGAGGGATGGGGAAACAGCCCAGAAAGGGCTGGGCCTCAGCTCCTGTACCAGCTGACTGCTATGATGATCTGCGCACCAGAGTTGGGAGCTGGGCAGTGTGGAGTCACAGCAGAACAGCACACTGTTCTGAGCAGAAGGGAGAGAGAGGTTCAGGATCTCCAAACCTGCTGCAGGGCTGACCCAGAACTCCTTGGTGTTTCTGGGCCTGTGGCTGTGGGAGGGGGAGGTGGGTCGTGCCAGGCCCCTGCCTTGGGTTCCCCCTGCACCTGCCTGTTAGCCTGTGTTAGTCTGATAAGGCCTGTTTGTCCAGACTTCTTCCGATTGGTTCCTTCCTTTTACACCCTGCAGGGGCCACAGAGATGCTATTGTGGGGCCATGGGGAGTTTCCAGGGCTTAAGCAAAACTATTTGCATGATTCTGTGATGTGAGGAGACCTAAACCAGAGGGTCAGGCCCTCTGATTCCAGCATCCTGAGGTGACTTCTTGGGCTTCTCAAGAGGGCCCGTTGCTGCCCTCTTGACCCCCTATAATCAGATGCACAAAGAATTGGAGTTCCTTGTCCCGTTGGCTCTGAGCCCAGAGAAGGAAGCACGTTTGCAGGAGGGACCTGGCATTTTCTGTGTAAGGCTGGGGAAGGAGCCGCTGCCAGGAACTGGGCGCCCTGGTCTGAAGGAGGCCTGACTGTTCCATGGTCTTGGCCAAGTCACCACCTCTCCCTGAGCCTCTGAGTCCCTCGCTGAGCCCTGAATGAGCACCGAGAGAGCTCCAAGAAGTCTCTGACCTGGCTATTGGATGATCACTGAAGCTGTGGTTGGGGAGACCCGGATTAGACACAAGTAGGGACTTTCTGGAGGTCCATTCTCTAAGGGGTTGGGGGAGGGGTGATGCCAGAGCTCCACTCGCCCTCTGGGGAGAGTTTTCCAGCCACATGTCTCCTGTTCCCATGGTCCCTGACCTCCCTCAAGGTCCTAGAGCCCAGACCCCACCCCGATGTGGGCCAGGGCTGAGTCTATCAGGAACGGGATCTGCGACTCCCCTCAAACCCATTCCCTGTCCATGGAGTTCTGGGAAATGTCTTTCCTTGGACTTGACTGCTGAGTCCATGAGGGTGGGGGTGGAAGGGAAGGGATGGGCAAGTGGTCTGGTACTACTTGCTGGGTGACCCATCTGGGCTTCCCCTTGTCTGGCCTCAATTTCCCCATCTGTTGGGACACCTGCTCTTCCTTCTGAAAAGGAAAAACAGAGAGATGGTGGGCGACCTCATCTTCTAAGTATCCAGGTGCCCAGAGGCTAGGGGCTGGCCTGAGAACCCCAATCCTTGTCCCTTTTCTGAACCCCATAAATTCTGCCGTTGGCTCTGACTTGGCAGAAAGTGAATGCTCTAGAAGCCTGTGGCCGTGGCATCTTATCAGCTGTGTGCCTAGCCTTCAGTGCCCCAGCCCGAGGCCTGGATGCGTCTGCACCATTTTGGTGGCAGCTGGGAGGGAAGGGGAGACTTCCTTTGGTGGCCTGACGTGGACAAGACTGAAAACCCAGAGCGAGGTCTGAAAACGGAAGGGCCAGGGGCTTTCTGTTCATAGCTGTGGGGACACAGTGGGCCCTGAGGGGAACACAGATGTCGGGTAAGTTAGAACAGAGTTGTGACTGGACTCCATGCCTCTGGCCCCAACGAGAGGGGTCCCTGATCTCTGTTTCTCCCCCACAG
Seq C2 exon
TGAACCCCTGCTGTTACTATCCATGCCAGCACCAGGGGATCTGTGTTCGCTTCGGCCTTGACCGCTACCAATGTGACTGCACCCGCACGGGCTATTATGGCCCCAACTGCACCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006716:ENSBTAT00000008833:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development