MmuINT0130069 @ mm9
Intron Retention
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42810386-42812676:-
Coord C1 exon
chr19:42812579-42812676
Coord A exon
chr19:42810528-42812578
Coord C2 exon
chr19:42810386-42810527
Length
2051 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCTCTGTGCTCTGCCCTGAGGTA
3' ss Score
-0.77
Exon sequences
Seq C1 exon
GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG
Seq A exon
GTGAGTGGGGACAGGGGTGGGGGTGGGGCGAATGCTGAAGAACACACTCCCTGATGAGAGGATGCTCACAGATGCATTTCCTGAGCTTATCTAGCACACAGGCATGAAGATCAGCATAGCACACATGCGGAATGAACTCGCTAAGAGTCACATCTGAAAACCGGAGTTCAGAGAAGTATCCCGCCCAGAGACACGTGGCTAATGAGAGGCAGAGCTGACTTCTAGCGCATGCTGTCTGAACCCCAGAATTCCTGCTAAGCTGTTCTCCTCCATGCATCTTTTGACAAAGCCTCTTCCTGCTGTCAGTATCTTCTGTCCTCCTCTTGGTTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTTTACTCCTGCAAAGCCCGTGTCTCTCCTCTCCCCACATACACACAGTTTCCTGCCAGGGCTGAGATCTGACCTCTGTGAGGACCTGTGTGTGCCTAGAGCCCAATAGGAGAGGAGCAGCCAGACAGCGAGGGCCATGGTTGTGTTTTGAACTCCTTGGCCTCTTGTAAGATCAGGAGTGGAAGGGTGTGTGTGCTGGTGTGTATGTATATGTGTGTGTGTGTGCATGCATTTGTCAGTGTGTGTATGTATGTGTGCATGTGTCAGTGTATGTATGTATGTGTATGTGCATGTTTTGTGCATACGTGTGTGTATGTGCATATGTGTATGTGCATGTGTGTGTACATGTTTTTGTGTGTATGTGTGCATGTGTGTGTGTGTGCTCGCACATGAGCATGTAGAGATGGAAAGGGCCACCAAGAGTGTTTCTAAGATGCAACTAGAGCTGTCAGTGTGGCTTATCTCTCAGGATAAAAGCACCCCCAGGAAGTGACTTTTCAATAGATGTCAAGCCAGTCCTGAAGTCCCCAGGGCCATGAAGAAGAAGCAAAGACAGCATTTGCTGCACTCTGCCAAGCTCTTGAGTAGCCAGCCAATACAGATCTGGGGCCTCCCATCCTTTTTTTCTGTTGGGTCTCAGGGAAGGTGAGACCCAAGCTACTTGTAAAAGATGAGTTTTAGAAACCCATTGCTTCGCTTAGCAACTGCTCATGAGCACCTGCCAGTGCTGGGTGCTGGAGACACAGTAGTCCAGGGACCAGAAATCCTCACGGGGCAGAGACCCAGAGCAAGCAGAGACTATCGGAAAGTGTTCTGTTAGTGGGCCAGCAGGGAAAGCTGCCCTGCTGTAATGAAAGGCCTGCAACAGGAAGTGTTTGATCTGAAACGAGTGGAAGAGAAGGGCTTGCTGAAAACAGACGAGGAAGGAAGAGGTTCCAGGCTGGCAGCCCAGCAGGTGCAGAGGCTGGAGTGGCAGGAGCAAGGGCTCCATTCCAGCAACCCAAGGGGTGTGCAGCTTAGCAGGGACATGCACTGTGAGGGGAGGAGTGGGCTGACACAGGCAGGAGTCATGGGCACCACCTGATGACACTGGCCTGTCCCCTCAGGCAATACTGTGCAGCAAAGGCTCTGAAAGGAAGGAGGATGGTAGCATTCGGGCTCTGAGACCAGGGCTCCAGGCTCCGCCAAGATGACCTGCAGGACAAGTGCTGAGGAGAGCTGGTGGCCCTGGTCTGGGCCTCCCTCCGCATGAGGGAGAGAAGAGAGAGGGAGCTAGTCAGGGCATCTGAGCATCTGCAGAGTTGACACGTGGTCAGGGTTGACGTCAGGGTTTCTGGTGGGTCATTGAAAGTGCCCTTCGTTTGGGTGGGGACACCGAGCACGGCCAGCTCAGAGGATGACAATGGTTCTGGGGTCACCAGAAATGCACACATGTAGAGATGCCTAGCTGGTGCTTGGCATGCTTGTGGCACATGGAGGCTGGGGTCCTGTGTCACATATACTCACGGGGGGGGGGGGGCTGTGGTATGGCACTGAGTTCGCGCAAAGGTGCAGGGACAGGGCTGGTTTGGGAAGTTGCTGAAGATCCAGGACAGAAAGGGCTATTTGCTTCTGAAACTGAGCTGGCCGCCGCCTCAGCCCGCCGTGCTCTGTGCTCTGCCCTGAG
Seq C2 exon
GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-Pyroxd2:NM_029011:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: