BtaINT0120938 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19340535-19342144:-
Coord C1 exon
chr26:19342047-19342144
Coord A exon
chr26:19340677-19342046
Coord C2 exon
chr26:19340535-19340676
Length
1370 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCTGATTATCTGTCCTCAGGTA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTGCTGGATCAGTGGTTTGAGTCTGAGCCTCTAAAAGCCACTCTAGCAACGGACGCAGTGATTGGAGCTATGACAAATCCCTACATTCCGGGAAGTGG
Seq A exon
GTGAGTGTGGCAGGTGAGGGGGGGCAGCAGGAGGGGCGCAGTCACCCCCACAAGAGCGAAAACTATCACTCACTGAACTCACCCGATGAACCAGGCAGGTGCCAGCTACTTCACACAGGATTCATTTAACCCTCAAGGCAACACTGGGGAGCTGTGGTTCAGAGAAGGGAGATAACCTTCCCAAAGTCACCCAGCTAGTAAGGGCAGAGCTGGTTCCCAGCCCGACTTGTCCGAACCCCGCATCCCTGCCAAGTCTTCCTTCTTAGCCACTGCTCCCCACTGTTGCAGTAGAAGAGCCTTGGTCCTGCCTCCCGCTGTGATGTCTCAACATGAGTATCTTCTCTATCTATCTATGCATCATCTATCCATCTACGTATCTATCTAGGCTCTCTTCCCTTCCCACGAAGCCCCGTTGCCTGCCGCTCTCCCGCAGGCCCTTTCCCTGGGTTCCAGGATGCGCACACACACAGACACCTCCACATGGATGGGAAGCTGCCTCTCCTTGTGAGTGGAGGTGTGCTGACAGCCTCATCCGAGAGGGGGCAGTCAGACATAATGAAGCGTGCAGTTGTGGTATGCCTTAATGAGCCCTGAAGGAGCAGGAATGGAGGGGGTGTGTGTGTGTGTGTGTAGGGATAGAGGATGCTGCCAAGTCTTGGGCCATTTCCAGGGCACCAGAAGATGCAACTAGAAGCTGTCAGTGTGGCTTATCTCTCAAGGGATAAGAGCACCCCTCAGAGGTGGTTTTTCAACACACACTAAGCCAGCCCCAAATTTCCCAGGGCCATGGAAAAGGGGGGTGTGCGTTGGCAAGTGCTTGCAACACCTTGACCAAGATCAGCCAGCCAATTAGGAATTTCCAGCTGGGGCCTGCAAGTCCTTTTCTCTGTGGGTGTCCAGGAGGCTTCGCCACTGCCCAGTTTATGAAATGGGCCTTTAAGACATTTTTTTTCCCATTAATTCTTTCAATAAATATGGATGGAGCAGTTGCCTGCACTAGGTGCTGAGGACATCGTAGTGAATGGAGCTCAAAACCCCATGGGAGAGGCAGATACAGAATGTGGAGTGGAGGACTATTTGCTGTGGGCGTTGTGATGGGAAAACGAGGCAGCGGGCAATGTGATCCAGGCTCAGAGGAGCCCCCATGCGGAAGAGATATCTCATCTGAAACTCTAGGGACAGGAGGAATTAGCCAAACAAAGGAAGAGGGAGGAGGGGCTCTAGATTCCAGAACAGCGTGTGCAGATGTAGAACTGCAAGTGGACGATGTGGTCCATTCAAGGCACTGAGAGAGAGAGAGTGTTTGCACCTAGAATTCTGGGGAGATTATACCCCATCTCCAGCCGCTGATTCTGATTATCTGTCCTCAG
Seq C2 exon
GTATGTGCTACTCCATCACGTGATGGGGAGTCTGGAGGGGGTTCGGGGGGCCTGGGGCTATGTCCAGGGTGGCATGGGTGCCCTCTCTGACGCCATCGCAAGCTCCGCCACCGCTCACGGAGTCAGCATCTTCACCGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313:ENSBTAT00000032952:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGATCAGTGGTTTGAGT
R:
TTTCGGTGAAGATGCTGACTCC
Band lengths:
238-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]