BtaEX0029240 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19340535-19342296:-
Coord C1 exon
chr26:19342235-19342296
Coord A exon
chr26:19342047-19342144
Coord C2 exon
chr26:19340535-19340676
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATGCCGCTCTGCTTTCCCAGGTG
3' ss Score
9.84
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTGCATCCTGGGAGCCCAGCTGCCCCAGTATTACCAGGTCCTCACAGCTCCAGCCGCCAAG
Seq A exon
GTGCTGGATCAGTGGTTTGAGTCTGAGCCTCTAAAAGCCACTCTAGCAACGGACGCAGTGATTGGAGCTATGACAAATCCCTACATTCCGGGAAGTGG
Seq C2 exon
GTATGTGCTACTCCATCACGTGATGGGGAGTCTGGAGGGGGTTCGGGGGGCCTGGGGCTATGTCCAGGGTGGCATGGGTGCCCTCTCTGACGCCATCGCAAGCTCCGCCACCGCTCACGGAGTCAGCATCTTCACCGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGTATTACCAGGTCCT
R:
GGTGAAGATGCTGACTCCGTG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development