DreEX6062877 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40174283-40183265:-
Coord C1 exon
chr13:40183204-40183265
Coord A exon
chr13:40176723-40176820
Coord C2 exon
chr13:40174283-40174424
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTTTCCACAGGTG
3' ss Score
13.66
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGTTGAAGCTGGGGAAGAATATACCAGATTTCTATGAACTTGTTACAGCTCCAGCTATGAAG
Seq A exon
GTGCTCAATCGTTGGTTTGAATCAGAGCCGTTGATAGCTACATTAGCCACTGACTCTGTGATCGGAGCAAACACGAGCCCAAATAATCCAGGAAGTGG
Seq C2 exon
GTATGTCCTGCTGCACCATGTCATGGGTGAGCTGGAGAAAGAAAAAGGCTCCTGGGGTTACGTGGAGGGAGGAATGGGTGGAGTGCCTCAATCCATCGCCCGCTCCGCCCGCTCTCTTGGAGCAGATATTTTCACAAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0159319=Amino_oxidase=PU(11.4=48.5)
C2:
PF0159319=Amino_oxidase=FE(33.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAAGCTGGGGAAGAATA
R:
GAGCGGGCGATGGATTGAG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]