MmuEX6032966 @ mm9
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42810386-42812822:-
Coord C1 exon
chr19:42812761-42812822
Coord A exon
chr19:42812579-42812676
Coord C2 exon
chr19:42810386-42810527
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGGGGCTTTGCTCTTCAGGTG
3' ss Score
8.76
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG
Seq A exon
GTGCTGGACCAACGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGATGCTGTGATTGGAGCAATGACGAGTCCCCACACTCCGGGGAGTGG
Seq C2 exon
GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGAGGTCCTCACAGCCCC
R:
TGTGAAGATGCTTGCTCCACG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: