GgaEX6040669 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21796125-21796643:+
Coord C1 exon
chr6:21796125-21796186
Coord A exon
chr6:21796277-21796374
Coord C2 exon
chr6:21796502-21796643
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTCTCCTGGACCAGATC
3' ss Score
6.58
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTGGCACTGGGGCGGCAGCTGCCCCACTTTTACGAGGTACTGACAGCCCCAGTCTCCAAG
Seq A exon
ATCCTGGATCACTGGTTTGAGTCAGAGCCTTTGAAGGCTACTTTGGCAACAGATGCAGTGATTGGGGCCATGAGCAGCCCCCACACCCCTGGTGGTGG
Seq C2 exon
GTATGTGCTGCTGCACCACGTCATGGGTGAGCTGGAGGGGCGGCGCGGTGCCTGGGGCTATGTGGCTGGGGGCATGGGGGCTCTGTCCCAAGCCATTGCCCGTGCAGCAGCCACCTACGGTGCCCACATCTTTACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'9-11,'9-8,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0099613=GDI=PU(36.3=68.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACGAGGTACTGACAGCCCC
R:
TGCTCTGTAAAGATGTGGGCAC
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]