MmuINT0130894 @ mm9
Intron Retention
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99473314-99473954:-
Coord C1 exon
chr15:99473824-99473954
Coord A exon
chr15:99473403-99473823
Coord C2 exon
chr15:99473314-99473402
Length
421 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGACCCAAACCCAAGAGATCTGCTTGCTTTTGCACCTCAAGACTAAATCTAAAGGTGTGCACCGCTACAGCCTGGCTTTATAA
Seq A exon
GTGAGTCTTTTATTGCAACTTCGATCTGGCACATGCTTGTAATCTCAGCATTTGGAAGGCTGGGGCAGGAAGATTGTGAGTTCAAGGCCAGCCTGAGTAACACAGTGAGAGATTGTCTTAAAATATAAACAAGCAGCCTGGTCGGATGATGTATGCCTTTAATCCTAGCATAGACAGATCTCTTAAATCAACGGGGGGGGGGGGGGGGGGGGAGGAGGGAGAAACAAAAAAAGAAACAAAAGGAAAGACGTTTTAATATAACTTAAGATCACGAAGAATTGTCGGCGTGAGATTCTTACGATGTGGCTGCAGAGAGGAGAGCCCAGGTGTCGGCCACTGGTGGATTTACTAGGTTGATGCAGGATCTTTTGTGAGGGGGAGAAAGCAGCTTCCTCCTAATGTATATTTGATTTCTTGGCAG
Seq C2 exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-Racgap1:NM_012025:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.022
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059116=DUF869=PU(12.6=58.6),PF054786=Prominin=PU(12.5=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTCTGTGTAGCCCTGG
R:
TCATTGATAATCTCCATCCGGCG
Band lengths:
206-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: