HsaINT0136508 @ hg38
Intron Retention
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50016631-50025461:-
Coord C1 exon
chr12:50025398-50025461
Coord A exon
chr12:50016720-50025397
Coord C2 exon
chr12:50016631-50016719
Length
8678 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
TCTGCCGTTGGGTGAGGCGCGGAGCGAAGTGAAGGGTGGCCCAGGTGGGGCCAGGCTGACTGAA
Seq A exon
GTGAGTAGTGGGGGTGCCAGACCAGGTGCGTCTGCCGCTGGATTGTGATAGGAAGCAGAGTGTTCGTGTGGTGAGCCGTGGCCGCCGCGGGGGTCCGGGACAGCGGGACAGCGGGACAGGCTGGCAGCCACAGCCTCTCCACTCGGGCTTTTCTGGGGTGGGGGTCGTGGCAGGTCGAATGGACGCGGCCTGGGAGGGTCGGGGGCTTCTGTCTTGGCGCCGGGTTTTGTGGAAAGCCGGGGGCGTCTTTTTGAGGTGGTGGCTGGACCAGGGCAGGAGTCATCCTAAACAAGAGTCTCTCAGTCAGATACGAGTTTAAGAGTGGTTGGAGTGACACCCCATCGTTTTCGAAGGGAAGAGCCCTGGTGTTTGAGAGGCCCGGGCGGCCTGCAGTGGAGCCCCTCTACTTCGTGGGTCTCGTATGTCTAGGGAGGCAAGGCAAGGCAATGACATCTTGTCCTTCTCATCCTGATTCTTACCCTCAGTAACAACGAGGCCTTACTTGTACACTTTCACGTACATTTCTCTTCACAGGATTTCATCCGTAGGCCGAGAGGTGTGTGTCGGAAAGTGGGGGTAGGTGGGTAGATAAGCCCTTTTTTTTTTTAAGAAAGCATTATCTTTCTAATGTGTCGGGTAAATAAGCTTTCCGAGTTATTGTAGGTGTTTAGAGAAGGCGCCTTTCCTGTAGCTTAATCATTCAATAAGTATTTATCTTTTGGAGGGGACTTAAAAAAATTTTTGTATATTTAGGGGGTACAAGTGCAGATTTCTTACATGCATATATCGCGTCGTGGTGAGGTCTGGTCTCTTAGTGTCCCCATCACTCAAATAGTGAACATTGTACCCAATACGTAGTTTTTCAACCCTCAGCCCCCTCCACCTTCCCATCTTTTGTATTCTCCAGTGTGTATTATTCCACTCTGTATGTCTGTGTACCCATTGATTAGCTTTCACTTATAAGTGAGAACATGCGGTATTTGACATTCTGAGTTATTTCACTGAGGATAATGGCCTCCAGTTCTATCCATGTTGCTGCAAAAGACGTGATTTCATTCTTTTTTATGGCTGAGTAGTATTCTGTGGTGTATGTCTGTCTATATATTACATTTTCTTTATCCAATCCTTCGTTGATGAACACTTAGGTTGATACCGTATCTTTGCTACTGTAAATTCTGCTGTGATAAATATATCAATGCAGGGGTCTTTTTGATATACTGATTTCTTTTTTTTTTTTGAGACGGAGTCTCGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGATTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTATAGGGGCCCGTCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCAGGATGGTCTTGATCTACTGACCTCCTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCGGCCGATATACTGATTTCTTACCCTTATACCCATTAGTGGGATTGCTGGATTGAATGGTAGTTCCATTTTTAGTTCTTTGAGAAGTCTCCATACTGTTTTCCATAAAGGTTGTACTAGTTTACTTTTTTTTTCTTTTTCTTTTTCTTTTTTGAGAAGGAGTCTTGCTCTGTGGTCCAGGCTGAAGTGCAGTGGTGCGATCTTGGCTCACTGCAAACTCTGCCTCCCGGGTTCAAATGATTCTTCTGCCTCAGCCTCCGGAGTAGCTGGAATTACAGGTGTGCACCACCATGCCTGGCTAATTTTTTATTTTTAATAGAGATACGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTTCTGGCCTCAAGTGATCAGACTGCCTTGGCCTCTCAAAATGATGGGATTAGAGGCGTCAGCCACCATGCCTGGCCTGTTTACTTTCATTCAATAGGTATTTCTTAAGTGCAAAGTGTAAGTAGAAGACAGTCTTATTTGGTCTTAAAGAATGTGCAGTTAATTTGGGGTAACAGAACTTAAAAAGATAACTGGTGAGTCTGGTAAGCCTATACACTGTTGAAAGTACTGTGCATTAGTACATCCCTTTTAGAAAACTTTTTGGCACTATTAAGAGCCATAAAATGTTTTTACACCCTAATATAGCACTCCTAGCCTTGGAAATCTAGTCTAAGGAAAACAGTCACCTGAAGAAAAATATTGTCCATAGGAATGCTCAATTCATTTATTCACCAAATATTTATTAGTCATTTACCAAATGTCAGGTACTGTTCTAGGCATCAGGGAAGAAAACACAAAAATCTCCGCTTTCTTGGAACTTAAGCTAGAGGAGAAACAGACAATAAACTGAATAAATATGTAAGTATGTTAGATGGAGAGAAGTGCTTTGGAACAAAGTAAAGCAGGGTAATGTTAGAGAAAGGCTGCAGTTTACAATAGGATGGTTGGAAAGACCTCACTGAGAAAGCAGCATTTGAGTAAAGATATTTGAGGTGAGAGAGTGACCATGCAAGAGATTCCAGGCAGAGGTAAGTGAAAAACTGGAAATGACCTAAACGTCCAAAGAAGAGAATAGTTAAATAGTTGTTCATCAACTCTTTAGAACTTAATGGAAACATGATAGAAGCAAAACACAAAATTATATGTAATGTATGATTGTAACACCATGAAATAAGAGTGTAAAATGGGCAAAGATTAGATCAGATGGTACATATAGTTGTTTAGGATAGTGAGATTTTTGTTTTGCTATTAATTTTTTGTTTTTGTTTTCGTTTTGTTTTTTTTTGAGACAGAGTTTCACTCTTGTTGCCCGGGCTGGAGTGCAATGGCGCCATCTTGGGTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGGAGCTGGGATTACAGGCATGCACCGTCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGATCAGGCTGGTCTCAAACTGCCGACCTAAGGTCATCCACCTGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCTAGCCTGTTTTACTGTTAACTTTTTGAACATAGAAGATTAATAATAAACAGTATTTTTGTATCTGCTAAATGAATGTTATAGATAATAAAGGAAATCATTTTGGACTGAAATGGTTAGGGAAGGCTTCAGTGAATTGGTGAGACTTATTCTAGACCTTGAAGGATGGAAGACCAGAATAGGAAGAATTCACAGGGAAAAAAAGAGGTATTCAGTATGCTGAACTTCTAGTAATTTTCTGAAAAATCACAATTCAAATCTTCCCTTCCTTATTTTAGTCTTCATGTTGGATTGAGAACATTTTGTTTACTCTCTGCAAGTGATTTGCTTATAAAGAACATTTGGTTTCAAGATAATCCTTCTGTCCGCCAGTTGTATTAGAGACTTTCGATACAGTGAAGCAGAAGCTGGACATTTCAGGAAAAGAATTGTCCTCACATTGTCCTCAAATGTGTTCCTATGAAAGGATCTTAAAGTACTGAGATTATCTTTGAGAATGGTTTTCCTTGACAGCAGGGAATCTATATTGTTGATTTCTTGGAAATCTCCAGATTTAGCAATGTTTGTGGGAAAGTTTTTCATTAAAACACTTTCCTGAAAAACTCCAGCAACCTTTCATTGCTTTGTCTTAAAGTATTTAACACCCTTGATGCATCTAAAAAACCTGATATATAGGTCTCTTAATAATGTTGTTTGAAGGAGGAGGAAGAAGAGGATAGAGACTTTTCCCAGGATACCCTGCAGTAAGATCTGTAATAGTCTGTTTTTCTGAAGGATGATATCTACCTCTTGGCTGGGTGATTGAAATTAAATTGGGGGCTCAAAGCAATCACATCCAGCTGAGACTCTTTCATGGTGTTTCCAGATTGCTCCCTTAGGGATACTCACAGATTGGGAATCTGTAACATACTGACTTCTCCACCTCTGGGGTTCCCCATCAATAACAGCTGAGATTCTCTAGCACCTTTTGGTTTAAAGTGCTCCACAAACTGAGTTTCTTGCTGCACGCAGGGATCGTTTCAGCTTTCCCGAAAAGGCAGCAGTCTCTGTTGTGGAAAGTGACAGCTGTTTTACAGCTGCAAAAGCAATGTACTACAATATGACTTTGTTTTTGTTTCCTTTCACATTAGTGTATCTCCTAGCTATGGACTAAATAATACATGGGGGGAAATAAACAAGTATTCATGAGGGTGAAAATGTGACCCAGCAGGAAAATTACAACTATTTTCAATTGACGTTGAATAGGGTGAGTAAATTTTAGCTTTTTGAGTTACAATTTGGCTGAGATATCAGAGTTAGTACTGATATAGAAAGATATTTTTGTCATCTATAAATAATTCCTGAGAGTCACTTCTGTAGAATGTTAATAAAAATATATGGTCCCCTAGCATATAAAGAGAAGAGGATTATATTCTGCTAGTGCCATTTTTGGATTACCCTAAGTAAATCTATGTTAGAGGAAAAAATAACTCTTCAGAAGCAGCAAACCTCATCTAGAACAGCTTGTTTAAAAGCCTAGACCTGGCCAAATTTTGCTGTTTCCTTGATTCTTCTTGGTCTGGGTTCCAGCTATAATTTGTGTTTTATATGTGTTGCTGTTTGTATGACATGTTATGGTTTGCAGGAGGTCTCTGAGTAGGTCTGCAACATATATGGTCTAATTGATATTTTTGTAACTTATCTCTTCAATGTGTTGGGTTGGAGAGAATATAGATTTTGGACTCAGACCTGGGTTTCAATGAGAACTCGACATTTATTGGTTAATTTAAGGTTTCTGGACTTAGTTGCCCATTGTCTGTAAAATGGAGATAATTAAGTTAGTGAGGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAAGCAGATTGCTAGAGGTCAGGAGTTCGAGACCAGCCTGACCAACTTGGTGAAACTCCATCTCTACTAAAAATACAAAAAAAAAAATTAGCTGGGCCTGGTGGTGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTCGAACCCTGAAAATGGAAGTTGCGGTGAACCGAGATGGTGCTACTGCACTCCAGCCTGGGTGACAGAGCAAGACACCGTCTCAGAAAAAAAGTCAAATTCACTTAAAGAAAAAGTGTACGTGAAGTGTCTAGTTTAGTGCCCGAATCATTTCAAAGCACCTAGTAAATACTGGATTCTTTTCTTTCTAATTGTATAGTATTATTTTTAAAAATGGTCTAAAATTCTGAATTTACTGATATCCTTATTTGGAGACAGCCTAGGGGGGAAAACACCTAGATTTGAGAATCACTGTTTTAGGATGGAAGTAACAACTATCAGACCAAAACCAAACCTAAACAAAAGAAACTCACTTCATACCAACTAAAAGATACCTTATATTTTGGTAGTGAGATTGTAAACTTATACATTTTAAAATTTTTGTAATATTCTATGAGGTAAATAGAGCAAGTGTTATTGTTTTCACTTTATAGATGAGTCATGGAATTTAAGTGATTTACTGAAGATTATACTACTGGTAGATAGAAGAGCTAAAGGTTTGTCCCAGGACCTTTTTATTTATTTATTTATTTATTTATTTATTTTAAGAGAAGGGGGTCTTGTGATGATCAGGGTGGTCTCAAACTCCTAGACTCAAGTGATCCTCCCACTTCAGCCTCCTGAATAGCTGGGACTACAGGCACGCACCACCACACCCATCTTGTCCCAGGACTTCTGCTCCCTCTCCCGCTTTTAACTGTTCTTTTTGCTTTAAACTATATTACACGTTGATGTTGAGGTAGAATGGAAATTCTTTTGACCATAGCATCACAGATATGTGTGTGTTTGTTCTCTGAATTAACACTTATCAATTTTTTTTTGTGAGCATCATATTAAATGCTACATGCTTGTGTGTGTAATATAGTAGTGCCGCATGTAAGGTTTCTCCCCTCAAATTTATATTCTAGCTGGGACACAGGGCAGAATCATATGGTAAAGTTTAATTCAAGTGCAAAGAGTTTGTATCTGAGTGGCAACTGCCTGAAGCAGTAGGGGAAGGACTGGAGGAAGGGAGTGCAATTGAAGTGAGTGGTGACAACCTGCAAGTGATAAGGGGGTGGGTATGGTAGATACATGAGAGAAGAGTACACAAGGTTTAGTGATTATGCTGTGGGAAGGGGAGGAACCAGAGGTGATTCTGAAGTTTGGAACTGAGCGACTGAGAGAATGATAAAAATAGGGAAATCAAAATTGGAAGTCAGTAGGGTATGGGATAGGGTAGGTCAGTGAGTAGCGTAGTTGATGGACATGAACAGGAAGAGTAGAACAGTGTCAGGAGGCTGAGGCCGGAGAATCACTTGAACCTGGGAAGCAGAGGTTGCAGTCAGCTGAGGTGGCGCCAGTGGACTCTGGCCTGGGGGACAGAGCAAGATTCTGTCTCAAAAAATTAAAAAAAAAAAAATGGACAAGAGAACAGGTTATATTGTAATTTAAGACTTAAAACCCCCCCTAAAAAAGCTTTTTTTTAAACAACCAGTTTTCAACATCCTAGCACCATGAAATTTTCCTTTTTGAATTCTTGGACAGATAGAAGTTTTGCCGTGGTATTGAGCTGTCTTATAGTCTCACGATATATAAGTGAATGCCGAGATGATAGAAAGTAATACCTTATATTAAAACTACTGATTAGAGTCTTCCATTTTTACCTCAGGAGAGCCAAAGGAAATCAACATTTGAATTGACTACCCAATGTCCTGCCCCTGTTTCTGTCCTGTAGCACTTAGGGTATGTTGCCTATTTCATTATATGTTAAATCCATGGCATCTCCATGAATTCCACAGCTCTTCCTGCCGGTTTTAATGCTATCCTTTTAGTTTTGTTCTTAGTTTAGAGAAAGATCTTTGTAATAAATTTGTTGGTCTGGTTGCTTAGCAGCTTGCTGTGATTATGTAGCTTGGAACAGATACTTGCCGTTTGAAAATCTTGGTTTCCGGCCCTGATTCAGGTATATGTTGCATCCAGGCTTGGAACTGAGAACTTTTTTTCTATTATAGCAATTATCATATGAGTATAAATGTATAATTCTGCAGCATTTAATATATAAAATATCTTCATGTTTATATATTCTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGGCACCCAGACTGGAGTGCAGTGGCACCATCTTAGCTTACTACAACCTCTGCCTCCCAGGTTCAAGCGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCACACATAACTGTGCCCAGCTAATTTTTGTGTTTTTAGAAGAGACGGGGTTTTGCCATGTTGGCTCAGGCTAGTCTCGAACTCCTGACCTCAAGTGATCCGCCCGCCTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTGCCGTGCCCAGCCTATGTTCATATATTCTTTGTCCTTTGTGCTTTTTTATATATTTTTTCTTGCTCTCATAGCTTGTGGTGCAATCTTGTAAACATTGCAAAATCACTAACCCTTCATAAGAGTTCTTAAAATTTTATTTAGGAAATAAGGACCTGGACTAGAATGTTGAAGCATTGGTTAAGAGAAACACAAGAATCCTTTAATGGTATTTCTGAGGACATTAAATTTCTAATAAAATTTGACTTTTTATTTCATTTCCTTGATAGTTTTCATAACATCCAGTTAATGTCTTTCTTTCTTGACTGTTAAGTGAAGATCTTATTTCCTCAAAGTGTTCCCAGTTAAAGTCTATTTGGAATAGAACCGCCTGTAACGACACTGTTTTTTCTATAGTATCAGCAGGCCTTTGAGGGGAAATACAAAGTCTGAAATTCACTATACAGGACACAGTAGCAAATGATTTTTGCTTTGCCCTTCGAACTGTGAAGGTGCTGTATTGTCTCTCTGATGCCAGAATGTGGTACAACATAATCCTTTGCCTCTACTTAGTATAAATTTATTAGACGTAGTTCCTGCACGCAGCCCAGCAGAGAGCCCTGTATTACAGAAATAATTCTTGTGCTGCTGAGCTGGCGATTTTCCCACTTAATCACTCATGTGACGTCATCTGTGCTTTTGGTAGGAAATGTGCTGACCATGTCCTGCATTTTAAAAGGCAGTTGCAACAGGGGCATTAGCTAAAAATGAAATTAAAAATAGATATTTTAAGTTACATTGTAGGTCTTCAAAGCCCACAAGGAATAAACTGGCAAAATTATTATATTAATCAATAGGCTTGACTTGAAGAACCACATTTTCTTGTTGGTCAGTCACTTGCTAATGAACTGACATGCTCTTTCCTATTTGTTTTCTGCTCCAAGTGATTGGAGGGGCTGTTATATTCAAAGGTCTGAAATGGTTTTCTAATTTTCAGATGAGTCTTAAACATTCCAAGTTTGTTTTTATAATAAGAATCACACAAAACATCTGTTGTTAGCTTGAGATTCTTATAATGGTAGTTATAAATGGAAGAGTCCAGATGTTGGTCACTAATGGCTGGATTGCTATAGAATCTTTTGTTGTGGGCGAGAAGGCAGGACCCCTAATGTATATTTGATTTCTTGGCAG
Seq C2 exon
AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800:ENST00000312377:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF140731=Cep57_CLD=PU(0.8=3.4)
C2:
PF111803=DUF2968=PU(23.4=89.7),PF078886=CALCOCO1=PU(16.0=69.0),PF140731=Cep57_CLD=PU(15.3=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000309871, ENSP00000404190, ENSP00000404808, ENSP00000446642, ENSP00000447177, ENSP00000447393, ENSP00000447429, ENSP00000448136, ENSP00000448697, ENSP00000448707, ENSP00000448860, ENSP00000449170, ENSP00000449186, ENSP00000449370, ENSP00000449574, ENSP00000449669, ENSP00000449959, ENSP00000450074
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development