HsaINT0136508 @ hg19
Intron Retention
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:9804]
Coordinates
chr12:50410414-50412372:-
Coord C1 exon
chr12:50412299-50412372
Coord A exon
chr12:50410503-50412298
Coord C2 exon
chr12:50410414-50410502
Length
1796 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GAGAGCCAAAGGAAATCAACATTTGAATTGACTACCCAATGTCCTGCCCCTGTTTCTGTCCTGTAGCACTTAGG
Seq A exon
GTATGTTGCCTATTTCATTATATGTTAAATCCATGGCATCTCCATGAATTCCACAGCTCTTCCTGCCGGTTTTAATGCTATCCTTTTAGTTTTGTTCTTAGTTTAGAGAAAGATCTTTGTAATAAATTTGTTGGTCTGGTTGCTTAGCAGCTTGCTGTGATTATGTAGCTTGGAACAGATACTTGCCGTTTGAAAATCTTGGTTTCCGGCCCTGATTCAGGTATATGTTGCATCCAGGCTTGGAACTGAGAACTTTTTTTCTATTATAGCAATTATCATATGAGTATAAATGTATAATTCTGCAGCATTTAATATATAAAATATCTTCATGTTTATATATTCTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGGCACCCAGACTGGAGTGCAGTGGCACCATCTTAGCTTACTACAACCTCTGCCTCCCAGGTTCAAGCGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCACACATAACTGTGCCCAGCTAATTTTTGTGTTTTTAGAAGAGACGGGGTTTTGCCATGTTGGCTCAGGCTAGTCTCGAACTCCTGACCTCAAGTGATCCGCCCGCCTGGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTGCCGTGCCCAGCCTATGTTCATATATTCTTTGTCCTTTGTGCTTTTTTATATATTTTTTCTTGCTCTCATAGCTTGTGGTGCAATCTTGTAAACATTGCAAAATCACTAACCCTTCATAAGAGTTCTTAAAATTTTATTTAGGAAATAAGGACCTGGACTAGAATGTTGAAGCATTGGTTAAGAGAAACACAAGAATCCTTTAATGGTATTTCTGAGGACATTAAATTTCTAATAAAATTTGACTTTTTATTTCATTTCCTTGATAGTTTTCATAACATCCAGTTAATGTCTTTCTTTCTTGACTGTTAAGTGAAGATCTTATTTCCTCAAAGTGTTCCCAGTTAAAGTCTATTTGGAATAGAACCGCCTGTAACGACACTGTTTTTTCTATAGTATCAGCAGGCCTTTGAGGGGAAATACAAAGTCTGAAATTCACTATACAGGACACAGTAGCAAATGATTTTTGCTTTGCCCTTCGAACTGTGAAGGTGCTGTATTGTCTCTCTGATGCCAGAATGTGGTACAACATAATCCTTTGCCTCTACTTAGTATAAATTTATTAGACGTAGTTCCTGCACGCAGCCCAGCAGAGAGCCCTGTATTACAGAAATAATTCTTGTGCTGCTGAGCTGGCGATTTTCCCACTTAATCACTCATGTGACGTCATCTGTGCTTTTGGTAGGAAATGTGCTGACCATGTCCTGCATTTTAAAAGGCAGTTGCAACAGGGGCATTAGCTAAAAATGAAATTAAAAATAGATATTTTAAGTTACATTGTAGGTCTTCAAAGCCCACAAGGAATAAACTGGCAAAATTATTATATTAATCAATAGGCTTGACTTGAAGAACCACATTTTCTTGTTGGTCAGTCACTTGCTAATGAACTGACATGCTCTTTCCTATTTGTTTTCTGCTCCAAGTGATTGGAGGGGCTGTTATATTCAAAGGTCTGAAATGGTTTTCTAATTTTCAGATGAGTCTTAAACATTCCAAGTTTGTTTTTATAATAAGAATCACACAAAACATCTGTTGTTAGCTTGAGATTCTTATAATGGTAGTTATAAATGGAAGAGTCCAGATGTTGGTCACTAATGGCTGGATTGCTATAGAATCTTTTGTTGTGGGCGAGAAGGCAGGACCCCTAATGTATATTTGATTTCTTGGCAG
Seq C2 exon
AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-RACGAP1:NM_001126103:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF078886=CALCOCO1=PU(10.0=58.6),PF140731=Cep57_CLD=PU(0.8=3.4)
C2:
PF111803=DUF2968=PU(24.3=89.7),PF078886=CALCOCO1=PU(20.4=72.4),PF052956=Luciferase_N=PU(5.4=10.3),PF140731=Cep57_CLD=PU(20.2=72.4)
Other Skipping Isoforms:
ENSP00000309871, ENSP00000309871f7272A, ENSP00000404190, ENSP00000404808, ENSP00000446642, ENSP00000447177, ENSP00000447393, ENSP00000447429, ENSP00000448136, ENSP00000448697, ENSP00000448707, ENSP00000448860, ENSP00000449170, ENSP00000449186, ENSP00000449370, ENSP00000449574, ENSP00000449669, ENSP00000449959, ENSP00000450074
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)