HsaEX0051850 @ hg19

Exon Skipping

Gene

ENSG00000161800 | RACGAP1

Description

Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:9804]

Coordinates

chr12:50400217-50419221:-

Coord C1 exon

chr12:50419181-50419221

Coord A exon

chr12:50410414-50410502

Coord C2 exon

chr12:50400217-50400419

Length

89 bp

Sequences

Splice sites

3' ss Seq

TATATTTGATTTCTTGGCAGAAA

3' ss Score

6.26

5' ss Seq

TCCGTAAGT

5' ss Score

10.27

Exon sequences

Seq C1 exon

GCGAAGTGAAGGGTGGCCCAGGTGGGGCCAGGCTGACTGAA

Seq A exon

AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC

Seq C2 exon

AATTTATCCAGTTGGCGAAGGACTTTGAGGATTTCCGTAAAAAGTGGCAGAGGACTGACCATGAGCTGGGGAAATACAAGGATCTTTTGATGAAAGCAGAGACTGAGCGAAGTGCTCTGGATGTTAAGCTGAAGCATGCACGTAATCAGGTGGATGTAGAGATCAAACGGAGACAGAGAGCTGAGGCTGACTGCGAAAAGCTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000161800-'0-7,'0-5,8-7

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features

Disorder rate (Iupred):

C1=NA A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

NA

A:

PF111803=DUF2968=PU(24.3=89.7),PF078886=CALCOCO1=PU(20.4=72.4),PF052956=Luciferase_N=PU(5.4=10.3),PF140731=Cep57_CLD=PU(20.2=72.4)

C2:

PF111803=DUF2968=FE(62.6=100),PF078886=CALCOCO1=FE(65.0=100),PF052956=Luciferase_N=PD(92.9=76.5),PF140731=Cep57_CLD=FE(64.4=100),PF0026115=Tropomyosin=PU(71.7=55.9)

Main Inclusion Isoform:

ENSP00000309871