GgaEX1047861 @ galGal4
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:335216-337353:+
Coord C1 exon
chrLGE22C19W28_E50C23:335216-335562
Coord A exon
chrLGE22C19W28_E50C23:336641-336729
Coord C2 exon
chrLGE22C19W28_E50C23:337151-337353
Length
89 bp
Sequences
Splice sites
3' ss Seq
TAGTTCTGTTTTCTTGGCAGGAG
3' ss Score
6.72
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATGGCTGCGCTCGGGGTCGCTGCAGAAGGCGCAGCCCTCGGGTTGGGGGTCCAGTCCCCACCGCCATCCTCCGCCTGCTCCGTTGCTAAGCAGCACAGGCTGGAAGCAGCTGCCAATAGTAACGATGGCGCCTGGCCGGCTTCACCACCCGGCAGCCACGGCAATCAGCGGAGCGGAAAAGCCTTGCCCTTAGCAGACATGGCGCCGGCTTGGCTTCAGACTCACAGCGAGCAGAGCCAATCAGAAACCGGGAGGGTGGAGAGCGCCCTGGGATTGGCTGGCGGCAGGGATTCAAACCGAATCGCGGGGCAGTTGAGGCCGGCTGTTGGAGCGGGAGCTCGGACACC
Seq A exon
GAGGATGGATACCACAGTGCGGAATCTGTGGAATTTGTGTGACCAACTCATACGCCAGGCTGAAGTTTTAAGTGAAGGAAACGAGTACC
Seq C2 exon
AATTTATTCAGTTGGCAAAGAACTTTGAAGACTATCGAAGAAAGTGGCAGAAAACTGAGCAGGAGCTTGGTAGGTACAAAGACCTTCTGATGAAAAGTGAAGCTGAGCGTAGTGCTTTGGATGTGAAGCTGAAACACGCTCGCAATCAAGTGGATGTAGAGATCAAACGCAGGCAAAAAGCTGAAGCAGACTGTGAGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'1-3,'1-1,13-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(5.8=6.9)
A:
PF0149614=V_ATPase_I=FE(21.7=100)
C2:
PF0149614=V_ATPase_I=FE(48.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAATCAGAAACCGGGAG
R:
CCTGCTCAGTTTTCTGCCACT
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]