DreEX0060447 @ danRer10
Exon Skipping
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33846840-33848694:-
Coord C1 exon
chr23:33848549-33848694
Coord A exon
chr23:33847163-33847253
Coord C2 exon
chr23:33846840-33847042
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTCTACAATGCAGGAG
3' ss Score
7.44
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCTACATGCAAACGTTAATAACACATCCGGGTAAACCTGGTCGAAAAATCTAGTACGACACTGTTCTCCCTGGAGAAAATTTTTAAAAAGTTTATAATCTCGGATCGCATCGCTTCACACGCAAGGCTGGGTGTCTACAGAAATCC
Seq A exon
GAGGACATGGAGACCGCTGTGATGAATCTTCACAGCATTTTCGAAAGCCTGCGGGCACAAGCTGATGTTCTCAATGAAAGCATTGAGCCCC
Seq C2 exon
AGTTCATTCAGCTGGCCATAAACTTTGAGGACAACCGTCGTAGATGGCTGAGACTCGAACAGGAGCTGAATGCATGCAAAGAAGTGCTCACTAAAGCTGAGACGGAGCGTGGAGCTCTGGAGGTCAAGCTCAAACATGCTCGTAACCAAGTAGATGTGGAGATCCGTAGAAGACAGAAAGCCGAGTCTGACTGCGCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACACTGTTCTCCCTGGAG
R:
TGCATGCATTCAGCTCCTGTT
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]