MmuEX6056438 @ mm10
Exon Skipping
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99639614-99651643:-
Coord C1 exon
chr15:99651507-99651643
Coord A exon
chr15:99642883-99642971
Coord C2 exon
chr15:99639614-99639819
Length
89 bp
Sequences
Splice sites
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGATCTGGCGGCGCGGTTTTACACTGCCGTTAGTGAGGCGCGTCGCTGGTAGACAGCAGCCCTCCTGGGGCGCGGCGGCCGGAGAGTGAGCGCCGCGGGCCGGACGGGGTTGCGTGTGCGCGGGGCCGGGAGCCTCG
Seq A exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
Seq C2 exon
TTGAATTCATCCAGGTTGTGAAGGACTTCGAGGACTTCCGAAAGAAGTATCAAAGAACCAACCAGGAGCTGGAGAAATTCAAAGACCTATTGTTGAAAGCAGAGACTGGGCGGAGCGCCCTGGACGTGAAGCTGAAGCATGCCCGTAATCAAGTGGACGTGGAGATCAAGCGGAGGCAGCGCGCTGAGGCAGAGTGTGCAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-'29-7,'29-3,31-7=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.023 C2=0.073
Domain overlap (PFAM):
C1:
NA
A:
PF059116=DUF869=PU(15.3=62.1)
C2:
PF059116=DUF869=PU(54.9=98.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTTACACTGCCGTTAGT
R:
TTTCGGAAGTCCTCGAAGTCCT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types